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Species specific amino acid sequence - Protein local structure relationships: An analysis in the light of a structural alphabet

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Academic year: 2021

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Figure 1 – Protein Blocks. From left to right and top to bottom, PyMol images (DeLano, 2002) of the 16 Protein Blocks of the structural alphabet (de Brevern et al., 2000)
Figure 2 - Comparison of amino acid distributions. Amino acid distributions observed for P
Figure 3 – Amino acid preferences of classical secondary structures. (a-c) Z-scores associated with the central positions of α-helix, coil and β-strand as assigned by DSSP, for the At, Pf, Sc and NR databanks
Figure 4 – Amino acid preferences of PBs. (a-d) Z-scores associated with the central positions of PB a, PB e, PB j and PB k respectively, for At, Pf, Sc and NR (see Figure 3 legend for details)
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