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HAL Id: inria-00084905

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Submitted on 24 Oct 2007

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The Statistics Of Spikes Trains For Some Simple Types Of Neuron Models

Olivier Faugeras, Théodore Papadopoulo, Jonathan Touboul, Denis Talay, Etienne Tanré, Mireille Bossy

To cite this version:

Olivier Faugeras, Théodore Papadopoulo, Jonathan Touboul, Denis Talay, Etienne Tanré, et al.. The Statistics Of Spikes Trains For Some Simple Types Of Neuron Models. [Research Report] RR-5950, INRIA. 2007, pp.15. �inria-00084905v4�

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a p p o r t

d e r e c h e r c h e

ISSN0249-6399ISRNINRIA/RR--5950--FR+ENG

Thème BIO

INSTITUT NATIONAL DE RECHERCHE EN INFORMATIQUE ET EN AUTOMATIQUE

The Statistics Of Spikes Trains For Some Simple Types Of Neuron Models

Olivier Faugeras — Theodore Papadopoulo — Jonathan Touboul — Denis Talay — Etienne Tanre — Mireille Bossy

N° 5950

October 18, 2007

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Unité de recherche INRIA Sophia Antipolis

2004, route des Lucioles, BP 93, 06902 Sophia Antipolis Cedex (France)

Téléphone : +33 4 92 38 77 77 — Télécopie : +33 4 92 38 77 65

The Statistics Of Spikes Trains For Some Simple Types Of Neuron Models∗†

Olivier Faugeras, Theodore Papadopoulo, Jonathan Touboul, Denis Talay, Etienne Tanre, Mireille Bossy

Th`eme BIO — Syst`emes biologiques Projet Odyss´ee§, TOSCA

Rapport de recherche n° 5950 — October 18, 2007 — 15 pages

Abstract: This paper describes some preliminary results of a research program for characterizing the statistics of spikes trains for a variety of commonly used neuron models in the presence of stochastic noise and deterministic input. The main angle of attack of the problem is through the use of stochastic calculus and ways of representing (local) martingales as Brownian motions by changing the time scale.

Key-words: Integrate and fire neuron, Brownian motion, Integrate and fire with synaptic conduc- tances, spikes statistics

This work was partially supported by the EC project number 15879, FACETS.

This work has been presented in NeuroComp06.

firstname.lastname@sophia.inria.fr

§Odyss´ee is a joint project between ENPC - ENS Ulm - INRIA

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Statistiques de trains de spikes pour quelques types de modeles de neurones simples

R´esum´e : Ce rapport de recherche decrit les r´esultats preliminaires d’un travail visant a caracteriser les distributions statistiques des trains de spikes, pour certains mod`eles de neurones couramment utilis´es, en pr´esence de bruit stochastique et avec des entr´ees d´eterministes. Le principal angle d’attaque du probl`eme est l’utilisation du calcul stochastique et la repr´esentations des martingales (locales) comme un mouvement brownien via un changement de l’´echelle de temps.

Mots-cl´es : Neurone integre et tire, integre et tire `a conductances synaptiques, mouvement brow- nien, statistiques de spikes

Ce travail a ´et´e partiellement financ´e par la Communaut´e Europ´eenne dans le cadre du projet num´ero 15879, FACETS.

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Statistics of spikes trains 3

1 Introduction

The dynamics of the discharge of neurons in vivo is greatly influenced by noise. It is generally agreed that a large part of the noise experienced by a cortical neuron is due to the intensive and random excitation of synaptic sites. The impact of noise on neuronal dynamics can be studied in detail in a simple spiking neuron model, the integrate-and-fire (IF) neuron [16]. For more complicated models the authors usually make use of the framework of the Fokker-Planck equation associated to a set of stochastic differential equations describing the dynamics of the neuron membrane potential in the presence of synaptic noise [14]. Since this equation cannot in general be solved analytically, the authors resort to some plausible approximations to obtain analytical results in various extreme case [3, 6]. In this paper we first give a general overview of methods arising from the stochastic calculus which we think can be very useful for studying this kind of problems. We then choose two of these methods and apply them to the description of the statistics of the inter-spikes time intervals for any input current and for a variety of synaptic noise types.

2 Stochastic calculus methods

2.1 Densities of hitting times

Stochastic diffusion models for neuron membrane potentials are widely admitted in the literature.

For such a model the time of the first spike is the first time at which the diffusion process hits a determined thresholdθ >0. Numerous authors consider that the probability density function (pdf) of this first hitting time conveys an important biological information.

In this section we briefly present a few mathematical tools which allow one, in some cases, to explicit this density function. As, in the sequel of the paper, we will deal with the Integrate and Fire model and variations thereof, we limit ourselves to consider diffusion processes of the type

Xt=X0+ Z t

0

(α(s)Xs)ds+σWt,

whereWis a a standard one dimensional Brownian motionW,σis a positive real number, andα(s) is a real valued function of time. We search the pdf of the stopping timeTX,θ= inf{s0;Xs=θ}. As shown in section 3 below, this question is equivalent to finding the pdf of the stopping time

TW,φ= inf{s0;Ws=φ(s)}

for some functionφwhich can easily be explicited in terms ofα(s)andθ. Notice that Strassen [15]

has actually shown that, whenφis of classC1, thenTW,φhas a continuous pdf. Unfortunately there are only a few cases where one can explicit this pdf as we now explain.

We first consider the case where the function α(s)is such thatφ is constant: φ(s) = a for alls. We write Ta forTW,φ. It is well known that the Laplace transform of a random variable fully characterizes its distribution. It is thus natural to search an explicit formula for the function u(x) :=Exexp(λTa)for all positive real numberλ, whereExis the expectation of the law of the

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4 Faugeras, Papadopoulo, Touboul, Talay, Tanre, Bossy

Brownian motionW issued fromxat time 0. To this end we consider the elliptic partial differential equation on(−∞, a):

1 2

d2u

dx2(x)λu(x) = 0for allx < a, u(a) = 1,

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with the limit condition:

x→−∞lim u(x) = 0.

The smooth solution to this PDE isu(x) = exp[

2λ(xa)]. Itˆo’s formula applied toexp(λt)u(Wt) shows that this process is a martingale. Thus the Optional Stopping Theorem (see, e.g., [10]) implies

Ex[exp(λTa)] =u(x) = exp[

2λ(xa)].

It now remains to invert the Laplace transform in order to get the density function ofTa: Px(Tadt) = ax

2πt3/2exp

(ax)2 2t

.

From this formula and Girsanov’s theorem it is easy to deduce the pdf whenφis of the type µt+c. For more general functionsφwe have to solve the two dimensional elliptic PDE

tu(t, x) +12d2u

dx2u(t, x)λu(t, x) = 0 for allx < φ(t), u(t, φ(t)) = 1,

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with the limit condition

x→−∞lim u(t, x) = 0.

If a smooth solution exists, we may apply Itˆo’s formula to the processexp(λt)u(t, Xt)and prove that it is a martingale. We then get

Ex

exp(λTW,φ)

=u(0, x).

The difficulty is to exhibit explicit solutions of (2) and to compute their inverse Laplace transform.

However, Groeneboom [7] succeeded to treat the caseφ(t) =γ

2t2andxγ >0. Using Girsanov’s Theorem, one easily sees that it is then enough to solve the one dimensional PDE

1 2

d2u

dx2(x)(γx+λ)u(x) = 0for allx >0, u(0) = 1,

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Statistics of spikes trains 5

with the limit condition: lim

x→∞u(x) = 0.The solution can be explicited in terms of the decreasing sequence(vk)k0of the negative zeros of the Airy functionAi(see, e.g., Borodin and Salminen for a definition). The Laplace transform inversion formula then leads to

Px TW,φdt

= 21/3

eγ26t3

× X

k=0

Ai vk+ (2γ)1/3x

Ai(vk) e2−1/3α2/3vktdt.

A completely different methodoly is the Method of Images (see Lerche [11]). It consists in consid- ering the functionhdefined by

h(t, x)dx=P(TW,φ> t, Wtdx).

Notice thathsolves the heat equation

∂th(t, x) =12∂x22h(t, x)for allt >0, x < φ(t), h(t, φ(t)) = 0,

h(0, x) =δ0(x)for allx < φ(0).

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Here we suppose thatφis concave andφ(0)>0.

Suppose now that the following representation holds true: for somea >0, h(t, x) = 1

tη x

t

1 θ

Z

0

1 tη

xs

t

F(ds), (5)

whereη(x) := 1

exp(x2/2)andF(ds)is a positiveσfinite measure such thatR 0 η(

ǫs)F(ds)<

for allǫ >0. In Lerche [11], it is shown that, ifz=φ(t)is the unique solution ofh(t, z) = 0for all fixedt, then

P0 TW,φt

= 1η

φ(t) t

+1 θ

Z

0

η

φ(t)s

t

F(ds). (6)

The difficulty is to explicit the measureF which seems to have been possible for very particular functionsφonly: see Patie [12] for a survey.

In conclusion, PDEs and Method of Images allow one to explicitly get the pdf of TW,φ for restrcited families of functionsφ. These families can be slightly enlarged by using the technical Doob’s transform: see Alili and Patie [1].

An alternative approach consists in searching approximations of the pdf. This approach has been successfully developed by Durbin for concave or convex functionsφ: see Theorem 1 below. An important challenge is to extend Durbin’s results to general functionsφ.

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6 Faugeras, Papadopoulo, Touboul, Talay, Tanre, Bossy

2.2 Monte Carlo simulations

As seen in section 2.1, explicit exact formulae or approximations of the pdf ofTW,φare generally difficult to obtain. Monte Carlo simulations apply without restriction to the model and the function φ. Indeed, simulations of the stochastic model (or of accurate discretizations of the model) allow one to obtain empirical density functions ofTW,φ.

For example, consider:

dXt = (Xt+ 1 + sin(2πt))dt+ 2dBt

X0 = 0.

And consider the stopping timeT = inf{t0;Xt2}We obtain numerically an approximation of the pdf ofT(see Fig. 1).

0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8

0 5 10 15 20

’oladensite.dat’ u 1:2

Figure 1: Approximation of the pdf ofT with 10E6 Monte Carlo simulations

This method permits us to control the error (see Cramer bound). This method is robust, it does need no assumption of convexity.

3 Integrate and fire with instantaneous synaptic conductances

The simplest model we consider is the integrate and fire where the membrane potentialufollows the stochastic differential equation

τ du= (µu(t))dt+Ie(t)dt+σdW,

with initial conditionu(0) = 0, whereτis the time constant of the membrane,µa reversal potential, Ie(t)the injected current and W(t)a Brownian process representing synaptic input. The neuron emits a spike each time its membrane potential reaches a thresholdθ. The membrane potential is then reinitialized to the initial value, i.e. 0. We are interested in characterizing the sequence {ti}, i= 1,· · ·,ti>0,ti+1> tiwhen the neuron emits spikes.

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Statistics of spikes trains 7

3.1 The time of the first spike

The problem of characterizing the first timet1when the membrane potential reaches the thresholdθ is defined as

t1=inf{t:t >0, u(t) =θ}, whereu(t)is given by the following expression

u(t) =µ(1eτt) +τ1Rt

0esτtIe(s)ds+στ Rt

0esτtdW(s) The conditionu(t) =θcan be rewritten as

Z t 0

esτdW = τσ

µ)eτt +µ1τ

Rt

0eτsIe(s)ds

b(t) (7) In order to characterizet1we need the following

Lemma 1 LetX(t) =Rt

0esτdW(s)The stochastic processX(t)is a Brownian motion if we change the time scale:X(t) =W

τ 2

e2τt 1

.

Proof This lemma is in fact a direct consequence of the Dubins-Schwarz theorem [9]. We provide an elemen- tary proof for completeness. Letr= τ2

e2

t τ 1

«

, it is a monotonously increasing function oftequal to 0 fort= 0. For all times0< r1< r2<· · ·< rn, the random variablesX(r1),X(r2)X(r1), . . .X(rn) X(rn−1)are independent becauseW is a Brownian motion. Finally, it is easy to see thatX(t2)X(t1)is distributed asN(0,Rt2

t1 e2

s

τ ds)which implies thatX(r2)X(r1)is distributed asN(0, r2r1).

We can now rewrite the threshold crossing condition above as W(r) =στh

µ)q

2

τr+ 1 +µ1τRr

0 I˜e(s)dsi , where

I˜e(s) =Ie(τ2log τ2s+ 1 ) q2

τs+ 1

The timet1at which the membrane potential reaches the thresholdθis obtained from the timer1at which the Brownian motionW reaches for the first time the curvea(r)defined by the equation

y=a(r) = τσh

µ)q

2

τr+ 1 +µτ1Rr

0 I˜e(s)dsi , by the formula

t1:=τ 2 log(2

τr1+ 1)

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8 Faugeras, Papadopoulo, Touboul, Talay, Tanre, Bossy

The corresponding problem has been studied in particular by Durbin [4, 5] who provides an integral equation for the probability density function (pdf) ofr1. From this integral equation he deduces a series approximation of the pdf and proves convergence when the curve is concave or convex.

This result is summarized in the

Theorem 1 (Durbin) LetW(τ)be a standard Brownian motion forτ 0 andy = a(τ)be a boundary such thata(0) >0anda(τ)is continuously differentiable forτ 0. The first-passage densityp(t)ofW)toa(t)is solution of the following integral equation

q0(t) =p(t) + Z t

0

p(r)(a(t)a(s)

ts a(t))f(t|s)ds, which can be written as

p(t) =

k

X

j=1

(1)j1qj(t) +rk(t), where

qj(t) = Z t

0

qj1(s)(a(t)a(s)

ts a(t))f(t|s)ds j1.

a(t)is the derivative ofa(t)andq0is given by q0(t) = (a(t)

t a(t))f0(t), wheref0(t)is the density ofW(t)on the boundary, i.e.

f0(t) = (2πt)1/2exp(a(t)2/2t),

andf(t|s)is the joint density ofW(s)andW(t)W(s)on the boundary, i.e.

f(t|s) =f0(s)(2π(ts))1/2exp((a(t)a(s))2/(2(ts))).

The remainderrk(t)goes to 0 ifa(τ)is convex or concave.

As an application of the above, we consider two examples.

3.1.1 Constant intensity

In this case the membrane potential is the realization of an Ornstein-Uhlenbeck (OU) process. The functiona(r)is convex, hence the hypotheses of Durbin’s theorem are satisfied. The moments of the pdf of the hitting time can be computed analytically [13], see the next theorem.

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Statistics of spikes trains 9

Theorem 2 Let us defineα:= µσ andβ:= θστ and the three following functions:

Φ1(z) := 1 2

X

n=1

2 β

n 1 n!Γ(n

2)(zα)n Φ2(z) := 1

2 X

n=1

2 β

n

1 n!Γ(n

2) Ψ(n

2)Ψ(1)

(zα)n

Φ1(z) := 3 8

X

n=1

2 β

n 1 n!Γ(n

2)(zα)nρ(3)n

whereΓis the gamma function,Ψ(z) =ΓΓ(z)(z)is the digamma function, and

ρ(3)n = Ψ(n

2)Ψ(1) 2 +

Ψ(n

2)Ψ(1) IfTis the hitting time of an OU process starting at 0 to the barrierθ, we have:

E[T] =τ1(1)Φ1(0))

E[T2] =τ2(2Φ1(1)2Φ2(1)1(1)Φ1(0) + Φ2(0)) E[T3] =τ3

1(1)31(1)Φ2(1) + Φ3(1)

6(Φ1(1)22(1))Φ1(0) + 3Φ1(1)Φ2(0)Φ3(0)

A comparison of the values of the first three moments computed from the pdf of the hitting time obtained from Durbin’s theorem or by simulation with the analytical values (obtained by truncat- ing the seriesΦi) is shown in table 1. This table shows that the theoretical values can be closely

method E[T] E[T2] E[T3]

theoretical values 1.9319289 7.1356162 40.0830265 Durbin, 30 terms, 1.9292822 7.1269290 39.8541918 Tmax= 1036,

step =102

Monte-Carlo, 1.932180 7.139402 40.079556 106realisations,

step =104

Table 1: Values of the first 3 moments of the OU process and the empirical values, for the parameters:

θ=σ= 2,µ=τ= 1

approximated if sufficiently many terms are taken into account in Durbin’s series expansion.

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10 Faugeras, Papadopoulo, Touboul, Talay, Tanre, Bossy

time-terms 3 5 7 9

103 0.86 0.88 0.88 0.88 105 0.86 0.97 0.96 0.96 107 0.82 1.00 0.98 0.98 109 0.88 0.97 1.00 0.99

Table 2: Values of the integral of the estimated pdf forIe= sin(2πt).

3.1.2 Periodic intensity

We chooseIe(t) = sin(2πf t). Table 2 shows the values of the integral of the estimated pdf. The parameters are the same as in the previous example,f = 1. It is seen that Durbin’s series converges very quickly. Figure 2 shows the shape of the pdf of the first passage time and the first four terms in the series approximation. Table 2 indicate that a very good approximation of the pdf can be obtained with only 5 terms in the series. The total computation time is 8 seconds on a 2GHz computer for 800 sample points.

q3 q2 pdf q1 q4

0 0.1 0.2 0.3 0.4 0.5

2 4 6 8 10 12 14 16 18 20

Figure 2: Four terms of the series approximation of the pdf whenIe(t) = sin(2πt)and the resulting pdf (the horizontal scale is inrunits).

3.2 The times of the next spikes

The previous analysis and results can be extended to the times t2, . . .tn of the next spikes. We discuss how to determinetngiventn1, i.e. how to computep(tn|tn1). The scenario is similar to

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Statistics of spikes trains 11

the one used to computet1. Fort > tn1,u(t)is given by the following expression u(t) =µ(1ettτn1) +τ1Rt

tn−1esτtIe(s)ds

+σ τ

Z t tn1

esτtdW(s) After some algebra, the condition for crossing the threshold can be written

X(t) = Z t

tn1

esτ dW(s) =b(t) +h(tn1), where

h(tn1) = τ σ

1 τ

Z tn1

0

esτIe(s)ds+µ(e

tn−1

τ 1)

,

and b(t) is defined in (refeq:bt). Consider the stochastic process Y(t) = X(t +tn1), us- ing once again the Dubins-Schwarz theorem, Y(t) = W(r) wherer = Rt

0 e2

s′+tn−1 τ ds = e

2tn1

τ τ 2(e2t

τ 1). The next threshold crossing timetnis the first crossing time ofW(r)with the boundaryb(t+tn1) +f(tn1) =b(τ2log(τ2e2tn−1τ r+ 1) +tn1) +h(tn1).

4 Integrate and fire with exponentially decaying synaptic con- ductances

We modify the model of section 3 to include exponentially decaying synaptic conductances.

τ du = (µu(t))dt+Ie(t)dt+Is(t)dt τsdIs = Is(t)dt+σdW

We can integrate this system of stochastic differential equations as follows. The first equation yields u(t) =µ(1eτt) +1τRt

0esτtIe(s)ds+τ1Rt

0esτtIs(s)ds, the second equation can be integrated as

Is(t) =Is(0)e

t τs + σ

τs

Z t 0

e

st τs dW(s),

whereIs(0)is a given random variable. We defineα1 = 1ττ1s. Replacing in the first equationIs(t) by its value in the second equation we obtain

u(t) =µ(1eτt) +1τRt

0esτtIe(s)ds+

Is(0) 1ττs(e

t

τs eτt) + σ τ τs

eτt Z t

0

eαs Z s

0

e

s

τsdW(s)

ds

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12 Faugeras, Papadopoulo, Touboul, Talay, Tanre, Bossy

4.1 The time of the first spike

The previous method must be slightly modified because of the following Lemma 2 LetX(t) =Rt

0eαs

Rs 0 e

s

τsdW(s)

ds, the stochastic processX(t)is not a martingale.

It is a continuous Gaussian process with covariance functionρ(r, t)for0rtgiven by 1

α2ρ(r, t) = τs

2er+t2 (e2rτs 1) + ατs

2(α+τs)e2r(α+ατsτs) 1)

(eαr +eαt)(er(2α+ατsτs) 1) Proof By exchanging the order of integration in the definition ofX(t)(Fubini’s theorem) we obtain

X(t) = Z t

0

e

s τs

„Z t

s

e

s αds

«

dW(s) =

α Z t

0

e

s τs(e

t αe

s

α)dW(s),

This expression is of the formX(t) = Rt

0f(t, s)dW(s)and thereforeX(t1)X(t2)is not independent ofX(t2)for0 t2 < t1. Because of the properties of the Brownian motion it is a continuous zero-mean Gaussian process whose covariance functionρ(r, t)for0rtis

E[X(r)X(t)] =E

»Z r

0

f(r, s)dW(s) Z t

0

f(t, s)dW(s)

= E

»Z r

0

f(r, s)f(t, s)d < W, W >s

= Z r

0

f(r, s)f(t, s)ds

and the result follows from the computation of the last integral.

In the same line of idea as in section 3, we can express the problem of characterizing the timet1

at which the membrane potential reaches the thresholdθas that at which the Gaussian processX reaches for the first time the curvea(τ)defined by the equation

y=a(τ) =ατs

σ Is(0)(eαt 1)+

τ τs

σ

µ)eτt +µ1 τ

Z t 0

eτsIe(s)ds

, This problem has been studied by Durbin [4] and is summarized in the following theorem

Theorem 3 (Durbin) LetX(τ)be a continuous zero-mean Gaussian process with covariance func- tionρ(r, t)for0 r tandy =a(τ)be a boundary such thata(τ)is continuous in0 τ < t

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Statistics of spikes trains 13

and left differentiable att. Under some mild assumptions onρthe first-passage densityp(t)ofX(τ) toa(t)is solution of the following Volterra integral equation of the second kind

p(t) =p1(t)+

Z t 0

[a(t)β1(s, t)a(s)β2(s, t)a(t)]f(t|s)p(s)ds, whereβ1andβ2are given by

β1(s, t) β2(s, t)

=

ρ(s, s) ρ(s, t) ρ(s, t) ρ(s, s)

1

ρ2(s, t) ρ1(s, t)

,

ρ1andρ2are the first order partial derivatives ofρwith respect to the first and second variables, and

p1(t) =f0(t)b1(t), where

b1(t) = a(t) ρ(t, t)

∂ρ(s, t)

∂s |s=ta(t)

f0(t)is the density ofX(t)on the boundary andf(t|s)is the conditional density ofX(t)ata(t) given thatX(s) =a(s).

4.2 The times of the next spikes

As in the case of instantaneous synaptic conductances, we can extend our analysis and compute the conditional probabilities p(tn|tn1), in effect p(tn|tn1, Is(0)), as follows. Fort > tn1. The expression for the membrane potential is

u(t) =µ(1e

ttn−1

τ ) +τ1Rt

tn1esτtIe(s)ds+

Is(0) 1ττs(e

ttn1

τs e

ttn−1

τ )+

σ τ τs

eτt Z t

tn−1

eαs Z s

0

e

s

τsdW(s)

ds The analysis proceeds as follows using theorem 3 instead of 1.

5 Conclusion

We have sketched out a number of techniques borrowed from the field of stochastic calculus that we believe to be useful in the analysis of spikes trains generated by neural models. We have applied two variations of one of these methods to the computation of the pdfs of the spikes times of two

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14 Faugeras, Papadopoulo, Touboul, Talay, Tanre, Bossy

instances of the integrate and fire neuron model with synaptic conductances. The first variation is based upon representing the membrane potential as the sum of a deterministic function and a local martingale. Due to a theorem by Dubins and Schwarz, by changing the time scale we can turn the local martingale into a Brownian motion and the problem of computing the pdfs of the spikes times into that of computing the first-passage density of the Brownian motion to a curved boundary. This particular problem can be solved through a method due to Durbin [5] which provides a series approximation of the pdf. Numerical experiments show that the series converges rapidly. A comparison with the results obtained by Monte-Carlo simulation is provided. The second variation is based upon representing the membrane potential as the sum of a deterministic function and a zero- mean continuous Gaussian process. Due to another theorem by Durbin the problem is shown to be equivalent to solving a Volterra integral equation of the second kind. These ideas can probably be extended to more complex neuron models [2, 8].

References

[1] Larbi Alili and Pierre Patie. On the first crossing times of a Brownian motion and a family of continuous curves. C. R. Math. Acad. Sci. Paris, 340(3):225–228, 2005.

[2] R. Brette and W. Gerstner. Adaptive exponential integrate-and-fire model as an effective description of neuronal activity. Journal of Neurophysiology, 94:3637–3642, 2005.

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Statistics of spikes trains 15

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