ADDITIONAL FILE 3
Consensus trees for the phylogenetic analyses of Zhou, Rabi and
Joyce:
“A new specimen of Manchurochelys manchoukuoensis from
the Early Cretaceous Jehol Biota of Chifeng, Inner Mongolia, China and
the phylogeny of Cretaceous basal eucryptodiran turtles”. BMC
Pruned strict consensus tree of Analysis A
Strict consensus of 220 trees
Basilochelys_macrobios Manchurochelys_manchoukuoensis Liaochelys_jianchangensis Sinemys_gamera Sinemys_lens Sinemys_brevispinus Ordosemys_leios Dracochelys_bicuspis Judithemys_sukhanovi Changmachelys_bohlini Hangaiemys_hoburensis Chengyuchelys Xinjiangchelys_junggarensis Xinjiangchelys_radiplicatoides Annemys_latiens Annemys_levensis Xinjiangchelys_wusu Carettochelys_insculpta Anosteira_ornata Lissemys_punctata Pelodiscus_sinensis Plastomenus_aff._thomassii Apalone_spinifera Hoplochelys_crassa Adocus_beatus Basilemys_variolosa Kinosternon_flavescens Sternotherus_odoratus Staurotypus_triporcatus Xenochelys_formosa Dermatemys_mawii Baptemys_wyomingensis Echmatemys_wyomingensis Geoclemys_hamiltonii Emys_orbicularis Trachemys_scripta Chrysemys_picta Stylemys_nebraskensis Chelonoidis_chilensis Chelonoidis_gringorum Eurotestudo_hermanni Gopherus_polyphemus Mongolemys_elegans Platysternon_megacephalum Chelydra_serpentina Protochelydra_zangerli Macroclemys_temminckii Dermochelys_coriacea Mesodermochelys_undulatus Chelonia_mydas Caretta_caretta Toxochelys_latiremys Santanachelys_gaffneyi Thalassemys_moseri Solnhofia_parsonsi Plesiochelys_etalloni Portlandemys_macdowelli Chisternon_undatum Baena_arenosa Boremys_pulchra Plesiobaena_antiqua Trinitichelys_hiatti Neurankylus_eximius Dinochelys_whitei Glyptops_plicatulus Pleurosternon_bullockii Dorsetochelys_delairi Podocnemis_expansa Pelomedusa_subrufa Erymnochelys_madagascariensis Araripemys_barretoi Chelus_fimbriatus Phrynops_geoffroanus Yaminuechelys_maior Chelodina_longicollis Chelodina_colliei Myuchelys_latisternum Elseya_dentata Prochelidella_cerrobarcinae Notoemys_laticentralis Caribemys_oxfordiensis Platychelys_oberndorferi Otwayemys_cunicularius Patagoniaemys_gasparinae Peligrochelys Kallokibotion_bajazidi Mongolochelys_efremovi Chubutemys_copelloi Meiolania_platyceps Warkalania_carinaminor Ninjemys_oweni Niolamia_argentina Indochelys_spatulata Eileanchelys_waldmani Condorchelys_antiqua Kayentachelys_aprix Australochelys_africanus Palaeochersis_talampayensis Proterochersis_robusta Proganochelys_quenstedti Odontochelys_semitestacea Anthodon_serrarius Owenetta_kitchingorum Sphenodon_punctatus g>g h h dh efh d d f >d c c b h g g g b b a>a a a e g g g h d e f c c c a b a
Strict consensus of 136 trees (0 taxa excluded) Siamochelys_peninsularis Basilochelys_macrobios Manchurochelys_manchoukuoensis Liaochelys_jianchangensis Sinemys_gamera Sinemys_lens Sinemys_brevispinus Ordosemys_skull Ordosemys_leios Dracochelys_bicuspis Judithemys_sukhanovi Changmachelys_bohlini Hangaiemys_hoburensis Chengyuchelys Xinjiangchelys_junggarensis Xinjiangchelys_radiplicatoides Annemys_latiens Annemys_levensis Xinjiangchelys_wusu Carettochelys_insculpta Anosteira_ornata Shachemys_laosiana Lissemys_punctata Pelodiscus_sinensis Plastomenus_aff._thomassii Apalone_spinifera Hoplochelys_crassa Adocus_beatus Yehguia_tatsuensis Basilemys_variolosa Kinosternon_flavescens Sternotherus_odoratus Staurotypus_triporcatus Xenochelys_formosa Dermatemys_mawii Baptemys_wyomingensis Emarginachelys_cretacea Echmatemys_wyomingensis Geoclemys_hamiltonii Emys_orbicularis Trachemys_scripta Chrysemys_picta Stylemys_nebraskensis Chelonoidis_chilensis Chelonoidis_gringorum Eurotestudo_hermanni Gopherus_polyphemus Mongolemys_elegans Platysternon_megacephalum Chelydra_serpentina Protochelydra_zangerli Macroclemys_temminckii Macroclemys_schmidti Dermochelys_coriacea Mesodermochelys_undulatus Chelonia_mydas Caretta_caretta Toxochelys_latiremys Santanachelys_gaffneyi Thalassemys_moseri Solnhofia_parsonsi Plesiochelys_etalloni Portlandemys_macdowelli Chisternon_undatum Baena_arenosa Boremys_pulchra Plesiobaena_antiqua Trinitichelys_hiatti Neurankylus_eximius Dinochelys_whitei Glyptops_plicatulus Pleurosternon_bullockii Dorsetochelys_delairi Podocnemis_expansa Pelomedusa_subrufa Erymnochelys_madagascariensis Araripemys_barretoi Chelus_fimbriatus Phrynops_geoffroanus Yaminuechelys_maior Chelodina_longicollis Chelodina_colliei Myuchelys_latisternum Elseya_dentata Prochelidella_cerrobarcinae Notoemys_laticentralis Caribemys_oxfordiensis Platychelys_oberndorferi Otwayemys_cunicularius Patagoniaemys_gasparinae Peligrochelys Kallokibotion_bajazidi Mongolochelys_efremovi Chubutemys_copelloi Meiolania_platyceps Warkalania_carinaminor Ninjemys_oweni Niolamia_argentina Indochelys_spatulata Eileanchelys_waldmani Heckerochelys_romani Condorchelys_antiqua Kayentachelys_aprix Australochelys_africanus Palaeochersis_talampayensis Proterochersis_robusta Proganochelys_quenstedti Odontochelys_semitestacea Anthodon_serrarius Owenetta_kitchingorum Simosaurus_gaillardoti Sphenodon_punctatus
Strict consensus of 136 trees (6 taxa excluded) Manchurochelys_manchoukuoensis Liaochelys_jianchangensis Sinemys_gamera Sinemys_lens Sinemys_brevispinus Ordosemys_leios Dracochelys_bicuspis Judithemys_sukhanovi Changmachelys_bohlini Hangaiemys_hoburensis Chengyuchelys Xinjiangchelys_radiplicatoides Annemys_latiens Xinjiangchelys_wusu Carettochelys_insculpta Anosteira_ornata Shachemys_laosiana Lissemys_punctata Pelodiscus_sinensis Plastomenus_aff._thomassii Apalone_spinifera Hoplochelys_crassa Adocus_beatus Basilemys_variolosa Kinosternon_flavescens Sternotherus_odoratus Staurotypus_triporcatus Xenochelys_formosa Dermatemys_mawii Baptemys_wyomingensis Emarginachelys_cretacea Echmatemys_wyomingensis Geoclemys_hamiltonii Emys_orbicularis Trachemys_scripta Chrysemys_picta Stylemys_nebraskensis Chelonoidis_chilensis Chelonoidis_gringorum Eurotestudo_hermanni Gopherus_polyphemus Mongolemys_elegans Platysternon_megacephalum Chelydra_serpentina Protochelydra_zangerli Macroclemys_temminckii Macroclemys_schmidti Dermochelys_coriacea Mesodermochelys_undulatus Chelonia_mydas Caretta_caretta Toxochelys_latiremys Santanachelys_gaffneyi Thalassemys_moseri Solnhofia_parsonsi Plesiochelys_etalloni Portlandemys_macdowelli Chisternon_undatum Baena_arenosa Boremys_pulchra Plesiobaena_antiqua Trinitichelys_hiatti Neurankylus_eximius Dinochelys_whitei Glyptops_plicatulus Pleurosternon_bullockii Dorsetochelys_delairi Podocnemis_expansa Pelomedusa_subrufa Erymnochelys_madagascariensis Araripemys_barretoi Chelus_fimbriatus Phrynops_geoffroanus Yaminuechelys_maior Chelodina_longicollis Chelodina_colliei Myuchelys_latisternum Elseya_dentata Prochelidella_cerrobarcinae Notoemys_laticentralis Caribemys_oxfordiensis Platychelys_oberndorferi Otwayemys_cunicularius Patagoniaemys_gasparinae Peligrochelys Kallokibotion_bajazidi Mongolochelys_efremovi Chubutemys_copelloi Meiolania_platyceps Warkalania_carinaminor Ninjemys_oweni Niolamia_argentina Indochelys_spatulata Eileanchelys_waldmani Heckerochelys_romani Condorchelys_antiqua Kayentachelys_aprix Australochelys_africanus Palaeochersis_talampayensis Proterochersis_robusta Proganochelys_quenstedti Odontochelys_semitestacea Anthodon_serrarius Owenetta_kitchingorum Simosaurus_gaillardoti Sphenodon_punctatus
Strict consensus of 151 trees (0 taxa excluded) Siamochelys_peninsularis Basilochelys_macrobios Manchurochelys_manchoukuoensis Liaochelys_jianchangensis Sinemys_gamera Sinemys_lens Sinemys_brevispinus Ordosemys_skull Ordosemys_leios Dracochelys_bicuspis Judithemys_sukhanovi Changmachelys_bohlini Hangaiemys_hoburensis Chengyuchelys Xinjiangchelys_junggarensis Xinjiangchelys_radiplicatoides Annemys_latiens Annemys_levensis Xinjiangchelys_wusu Carettochelys_insculpta Anosteira_ornata Shachemys_laosiana Lissemys_punctata Pelodiscus_sinensis Plastomenus_aff._thomassii Apalone_spinifera Hoplochelys_crassa Adocus_beatus Yehguia_tatsuensis Basilemys_variolosa Kinosternon_flavescens Sternotherus_odoratus Staurotypus_triporcatus Xenochelys_formosa Dermatemys_mawii Baptemys_wyomingensis Emarginachelys_cretacea Echmatemys_wyomingensis Geoclemys_hamiltonii Emys_orbicularis Trachemys_scripta Chrysemys_picta Stylemys_nebraskensis Chelonoidis_chilensis Chelonoidis_gringorum Eurotestudo_hermanni Gopherus_polyphemus Mongolemys_elegans Platysternon_megacephalum Chelydra_serpentina Protochelydra_zangerli Macroclemys_temminckii Macroclemys_schmidti Dermochelys_coriacea Mesodermochelys_undulatus Chelonia_mydas Caretta_caretta Toxochelys_latiremys Santanachelys_gaffneyi Thalassemys_moseri Solnhofia_parsonsi Plesiochelys_etalloni Portlandemys_macdowelli Chisternon_undatum Baena_arenosa Boremys_pulchra Plesiobaena_antiqua Trinitichelys_hiatti Neurankylus_eximius Dinochelys_whitei Glyptops_plicatulus Pleurosternon_bullockii Dorsetochelys_delairi Podocnemis_expansa Pelomedusa_subrufa Erymnochelys_madagascariensis Araripemys_barretoi Chelus_fimbriatus Phrynops_geoffroanus Yaminuechelys_maior Chelodina_longicollis Chelodina_colliei Myuchelys_latisternum Elseya_dentata Prochelidella_cerrobarcinae Notoemys_laticentralis Caribemys_oxfordiensis Platychelys_oberndorferi Otwayemys_cunicularius Patagoniaemys_gasparinae Peligrochelys Kallokibotion_bajazidi Mongolochelys_efremovi Chubutemys_copelloi Meiolania_platyceps Warkalania_carinaminor Ninjemys_oweni Niolamia_argentina Indochelys_spatulata Eileanchelys_waldmani Heckerochelys_romani Condorchelys_antiqua Kayentachelys_aprix Australochelys_africanus Palaeochersis_talampayensis Proterochersis_robusta Proganochelys_quenstedti Odontochelys_semitestacea Anthodon_serrarius Owenetta_kitchingorum Simosaurus_gaillardoti Sphenodon_punctatus
Strict consensus of 151 trees Siamochelys_peninsularis Manchurochelys_manchoukuoensis Sinemys_gamera Sinemys_lens Sinemys_brevispinus Dracochelys_bicuspis Chengyuchelys Xinjiangchelys_radiplicatoides Annemys_latiens Xinjiangchelys_wusu Carettochelys_insculpta Anosteira_ornata Shachemys_laosiana Lissemys_punctata Pelodiscus_sinensis Plastomenus_aff._thomassii Apalone_spinifera Hoplochelys_crassa Adocus_beatus Basilemys_variolosa Kinosternon_flavescens Sternotherus_odoratus Staurotypus_triporcatus Xenochelys_formosa Dermatemys_mawii Baptemys_wyomingensis Geoclemys_hamiltonii Emys_orbicularis Trachemys_scripta Chrysemys_picta Stylemys_nebraskensis Chelonoidis_chilensis Chelonoidis_gringorum Eurotestudo_hermanni Gopherus_polyphemus Mongolemys_elegans Chelydra_serpentina Protochelydra_zangerli Macroclemys_temminckii Macroclemys_schmidti Dermochelys_coriacea Mesodermochelys_undulatus Chelonia_mydas Caretta_caretta Toxochelys_latiremys Santanachelys_gaffneyi Thalassemys_moseri Solnhofia_parsonsi Plesiochelys_etalloni Portlandemys_macdowelli Chisternon_undatum Baena_arenosa Boremys_pulchra Plesiobaena_antiqua Trinitichelys_hiatti Neurankylus_eximius Dinochelys_whitei Glyptops_plicatulus Pleurosternon_bullockii Dorsetochelys_delairi Podocnemis_expansa Pelomedusa_subrufa Erymnochelys_madagascariensis Araripemys_barretoi Chelus_fimbriatus Phrynops_geoffroanus Yaminuechelys_maior Chelodina_longicollis Chelodina_colliei Myuchelys_latisternum Elseya_dentata Prochelidella_cerrobarcinae Notoemys_laticentralis Caribemys_oxfordiensis Platychelys_oberndorferi Otwayemys_cunicularius Patagoniaemys_gasparinae Peligrochelys Kallokibotion_bajazidi Mongolochelys_efremovi Chubutemys_copelloi Meiolania_platyceps Warkalania_carinaminor Ninjemys_oweni Niolamia_argentina Indochelys_spatulata Eileanchelys_waldmani Condorchelys_antiqua Kayentachelys_aprix Australochelys_africanus Palaeochersis_talampayensis Proterochersis_robusta Proganochelys_quenstedti Odontochelys_semitestacea Anthodon_serrarius Owenetta_kitchingorum Sphenodon_punctatus m ijklmn>m h e d c b o fghijkmo ln b b a>a a a mn h h f a b a
Strict consensus of 143 trees (14 taxa excluded)
Siamochelys_peninsularis
Manchurochelys_manchoukuoensis
Liaochelys_jianchangensis
Sinemys_gamera
Sinemys_lens
Sinemys_brevispinus
Ordosemys_skull
Ordosemys_leios
Dracochelys_bicuspis
Judithemys_sukhanovi
Changmachelys_bohlini
Hangaiemys_hoburensis
Chengyuchelys
Xinjiangchelys_junggarensis
Xinjiangchelys_radiplicatoides
Annemys_latiens
Annemys_levensis
Xinjiangchelys_wusu
Carettochelys_insculpta
Anosteira_ornata
Shachemys_laosiana
Lissemys_punctata
Pelodiscus_sinensis
Plastomenus_aff._thomassii
Apalone_spinifera
Hoplochelys_crassa
Adocus_beatus
Yehguia_tatsuensis
Basilemys_variolosa
Kinosternon_flavescens
Sternotherus_odoratus
Staurotypus_triporcatus
Xenochelys_formosa
Dermatemys_mawii
Baptemys_wyomingensis
Emarginachelys_cretacea
Echmatemys_wyomingensis
Geoclemys_hamiltonii
Emys_orbicularis
Trachemys_scripta
Chrysemys_picta
Stylemys_nebraskensis
Chelonoidis_chilensis
Chelonoidis_gringorum
Eurotestudo_hermanni
Gopherus_polyphemus
Mongolemys_elegans
Platysternon_megacephalum
Chelydra_serpentina
Protochelydra_zangerli
Macroclemys_temminckii
Macroclemys_schmidti
Dermochelys_coriacea
Mesodermochelys_undulatus
Chelonia_mydas
Caretta_caretta
Toxochelys_latiremys
Santanachelys_gaffneyi
Thalassemys_moseri
Solnhofia_parsonsi
Plesiochelys_etalloni
Portlandemys_macdowelli
Chisternon_undatum
Baena_arenosa
Boremys_pulchra
Plesiobaena_antiqua
Trinitichelys_hiatti
Neurankylus_eximius
Dinochelys_whitei
Glyptops_plicatulus
Pleurosternon_bullockii
Dorsetochelys_delairi
Podocnemis_expansa
Pelomedusa_subrufa
Otwayemys_cunicularius
Patagoniaemys_gasparinae
Peligrochelys
Kallokibotion_bajazidi
Mongolochelys_efremovi
Chubutemys_copelloi
Meiolania_platyceps
Warkalania_carinaminor
Ninjemys_oweni
Niolamia_argentina
Indochelys_spatulata
Eileanchelys_waldmani
Heckerochelys_romani
Condorchelys_antiqua
Kayentachelys_aprix
Australochelys_africanus
Palaeochersis_talampayensis
Proterochersis_robusta
Proganochelys_quenstedti
Odontochelys_semitestacea
Anthodon_serrarius
Owenetta_kitchingorum
Simosaurus_gaillardoti
Sphenodon_punctatus
Strict consensus of 143 trees (19 taxa excluded)
Manchurochelys_manchoukuoensis
Liaochelys_jianchangensis
Sinemys_gamera
Sinemys_lens
Sinemys_brevispinus
Ordosemys_leios
Dracochelys_bicuspis
Judithemys_sukhanovi
Changmachelys_bohlini
Hangaiemys_hoburensis
Chengyuchelys
Xinjiangchelys_radiplicatoides
Annemys_latiens
Annemys_levensis
Xinjiangchelys_wusu
Carettochelys_insculpta
Anosteira_ornata
Shachemys_laosiana
Lissemys_punctata
Pelodiscus_sinensis
Plastomenus_aff._thomassii
Apalone_spinifera
Hoplochelys_crassa
Adocus_beatus
Basilemys_variolosa
Kinosternon_flavescens
Sternotherus_odoratus
Staurotypus_triporcatus
Xenochelys_formosa
Dermatemys_mawii
Baptemys_wyomingensis
Echmatemys_wyomingensis
Geoclemys_hamiltonii
Emys_orbicularis
Trachemys_scripta
Chrysemys_picta
Stylemys_nebraskensis
Chelonoidis_chilensis
Chelonoidis_gringorum
Eurotestudo_hermanni
Gopherus_polyphemus
Mongolemys_elegans
Platysternon_megacephalum
Chelydra_serpentina
Protochelydra_zangerli
Macroclemys_temminckii
Macroclemys_schmidti
Dermochelys_coriacea
Mesodermochelys_undulatus
Chelonia_mydas
Caretta_caretta
Toxochelys_latiremys
Santanachelys_gaffneyi
Thalassemys_moseri
Solnhofia_parsonsi
Plesiochelys_etalloni
Portlandemys_macdowelli
Chisternon_undatum
Baena_arenosa
Boremys_pulchra
Plesiobaena_antiqua
Trinitichelys_hiatti
Neurankylus_eximius
Dinochelys_whitei
Glyptops_plicatulus
Pleurosternon_bullockii
Dorsetochelys_delairi
Podocnemis_expansa
Pelomedusa_subrufa
Otwayemys_cunicularius
Patagoniaemys_gasparinae
Peligrochelys
Kallokibotion_bajazidi
Mongolochelys_efremovi
Chubutemys_copelloi
Meiolania_platyceps
Warkalania_carinaminor
Ninjemys_oweni
Niolamia_argentina
Indochelys_spatulata
Eileanchelys_waldmani
Heckerochelys_romani
Condorchelys_antiqua
Kayentachelys_aprix
Australochelys_africanus
Palaeochersis_talampayensis
Proterochersis_robusta
Proganochelys_quenstedti
Odontochelys_semitestacea
Anthodon_serrarius
Owenetta_kitchingorum
Simosaurus_gaillardoti
Sphenodon_punctatus
GC values, 100 replicates, cut=1 (tree 0) - Standard Bootstrap Basilochelys_macrobios Manchurochelys_manchoukuoensis Liaochelys_jianchangensis Sinemys_gamera Sinemys_lens Sinemys_brevispinus Ordosemys_leios Dracochelys_bicuspis Judithemys_sukhanovi Changmachelys_bohlini Hangaiemys_hoburensis Chengyuchelys Xinjiangchelys_radiplicatoides Annemys_latiens Annemys_levensis Xinjiangchelys_wusu Carettochelys_insculpta Anosteira_ornata Shachemys_laosiana Lissemys_punctata Pelodiscus_sinensis Plastomenus_aff._thomassii Apalone_spinifera Hoplochelys_crassa Adocus_beatus Basilemys_variolosa Kinosternon_flavescens Sternotherus_odoratus Staurotypus_triporcatus Xenochelys_formosa Dermatemys_mawii Baptemys_wyomingensis Echmatemys_wyomingensis Geoclemys_hamiltonii Emys_orbicularis Trachemys_scripta Chrysemys_picta Stylemys_nebraskensis Chelonoidis_chilensis Chelonoidis_gringorum Eurotestudo_hermanni Gopherus_polyphemus Mongolemys_elegans Platysternon_megacephalum Chelydra_serpentina Protochelydra_zangerli Macroclemys_temminckii Macroclemys_schmidti Dermochelys_coriacea Mesodermochelys_undulatus Chelonia_mydas Caretta_caretta Toxochelys_latiremys Santanachelys_gaffneyi Thalassemys_moseri Solnhofia_parsonsi Plesiochelys_etalloni Portlandemys_macdowelli Chisternon_undatum Baena_arenosa Boremys_pulchra Plesiobaena_antiqua Trinitichelys_hiatti Neurankylus_eximius Dinochelys_whitei Glyptops_plicatulus Pleurosternon_bullockii Dorsetochelys_delairi Podocnemis_expansa Pelomedusa_subrufa Erymnochelys_madagascariensis Araripemys_barretoi Chelus_fimbriatus Phrynops_geoffroanus Yaminuechelys_maior Chelodina_longicollis Chelodina_colliei Myuchelys_latisternum Elseya_dentata Prochelidella_cerrobarcinae Notoemys_laticentralis Caribemys_oxfordiensis Platychelys_oberndorferi Otwayemys_cunicularius Patagoniaemys_gasparinae Peligrochelys Kallokibotion_bajazidi Mongolochelys_efremovi Chubutemys_copelloi Meiolania_platyceps Warkalania_carinaminor Ninjemys_oweni Niolamia_argentina Indochelys_spatulata Eileanchelys_waldmani Heckerochelys_romani Condorchelys_antiqua Kayentachelys_aprix Australochelys_africanus Palaeochersis_talampayensis Proterochersis_robusta Proganochelys_quenstedti Odontochelys_semitestacea Anthodon_serrarius Owenetta_kitchingorum Simosaurus_gaillardoti Sphenodon_punctatus 32 7 3 3 2 14 100 98 35 5 9 13 74 23 10 76 35 15 68 9 2 74 17 15 18 8 58 59 88 48 3 25 24 14 14 41 25 16 22 5 64 79 15 2 12 100 79 32 56 53 39 8 17 36 46 5 7 43 20 100 21 3
