Article
Reference
The role of the transcriptional activator protein DBP in circadian liver gene expression
WUARIN, Jérôme, et al.
Abstract
DBP, a liver-enriched transcriptional activator protein of the leucine zipper protein family, accumulates according to a very strong circadian rhythm (amplitude approx. 1000-fold). In rat parenchymal hepatocytes, the protein is barely detectable during the morning hours. At about 2 p.m., DBP levels begin to rise, reach maximal levels at 8 p.m. and decline sharply during the night. This rhythm is free-running: it persists with regard to both its amplitude and phase in the absence of external time cues, such as daily dark/light switches. Also, fasting of rats for several days influences neither the amplitude nor the phase of circadian DBP expression.
Since the levels of DBP mRNA and nascent transcripts also oscillate with a strong amplitude, circadian DBP expression is transcriptionally controlled. While DBP mRNA fluctuates with a similar phase and amplitude in most tissues examined, DBP protein accumulates to high concentrations only in liver nuclei. Hence, at least in nonhepatic tissues, cyclic DBP transcription is unlikely to be controlled by a positive and/or negative feedback mechanism involving DBP itself. More [...]
WUARIN, Jérôme, et al . The role of the transcriptional activator protein DBP in circadian liver gene expression. Journal of Cell Science , 1992, no. Supplement 16, p. 123-127
DOI : 10.1242/jcs.1992.Supplement_16.15
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http://archive-ouverte.unige.ch/unige:138558
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Journal of Cell Science, Supplement 16, 123-127 (1992)
Printed in Great Britain © The Company of Biologists Limited 1992 123
The role of the transcriptional activator protein DBP in circadian liver gene expression
JÉRÔME WUARIN, EILEEN FALVEY, DAN LAVERY, DALE TALBOT, ED SCHMIDT, VINCENT OSSIPOW, PHILIPPE FONJALLAZ and UELI SCHIBLER*
Department o f Molecular Biology, Sciences II, 30 Quai Ernest Ansermet, CH-1211 Geneva-4, Switzerland
^Corresponding author
Summary
DBP, a liver-enriched transcriptional activator protein of the leucine zipper protein family, accumulates according to a very strong circadian rhythm (amplitude approx. 1000-fold). In rat parenchymal hepatocytes, the protein is barely detectable during the morning hours.
At about 2 p.m., DBP levels begin to rise, reach maxi- mal levels at 8 p.m. and decline sharply during the night.
This rhythm is free-running: it persists with regard to both its amplitude and phase in the absence of external time cues, such as daily dark/light switches. Also, fast- ing of rats for several days influences neither the ampli- tude nor the phase of circadian DBP expression. Since the levels of DBP mRNA and nascent transcripts also oscillate with a strong amplitude, circadian DBP expression is transcriptionally controlled. While DBP mRNA fluctuates with a similar phase and amplitude in most tissues examined, DBP protein accumulates to high concentrations only in liver nuclei. Hence, at least in
nonhepatic tissues, cyclic DBP transcription is unlikely to be controlled by a positive and/or negative feedback mechanism involving DBP itself. More likely, the circa- dian DBP expression is governed by hormones whose peripheral concentrations also oscillate during the day.
Several lines of evidence suggest a pivotal role of glu- cocorticoid hormones in establishing the DBP cycle.
Two genes whose mRNAs and protein products accu- mulate according to a strong circadian rhythm with a phase compatible with regulation by DBP encode enzymes with key functions in cholesterol metabolism:
HMG-coA reductase is the rate-limiting enzyme in cho- lesterol synthesis; cholesterol 7-a hydroxylase performs the rate-limiting step in the conversion of cholesterol to bile acid. DBP may thus be involved in regulating cho- lesterol homeostasis.
Key words: liver transcription factor, DBP, circadian rhythms.
Introduction
Our laboratory has chosen the liver as a paradigm for study- ing cell-type-specific gene expression. By identifying cis- acting albumin promoter elements and the transcription fac- tors interacting with them, we hoped to gain access to key regulators of hepatic gene expression. A detailed functional dissection of the albumin promoter revealed six cognate sites (A, B, C, D, E and F) for sequence-specific DNA- binding proteins (Lichtsteiner et al., 1987). Two of these, sites B and D, proved to be particularly important for effi- cient cell-type-specific transcription (Maire et al., 1989;
Lichtsteiner and Schibler, 1989). The proteins binding to these elements have been identified, purified and their cDNA and genes isolated by molecular cloning techniques (for review, see Crabtree et al., 1992). In this paper we con- centrate on our results with a protein, DBP, which binds to the albumin D promoter element (Mueller et al., 1990).
Studies on DBP expression have led to the surprising dis- covery that in adult rats, DBP accumulates according to a
very strong circadian rhythm (Wuarin and Schibler, 1990).
In the next paragraphs we will focus on the regulation of circadian DBP expression and speculate on its purpose.
DBP, a liver-enriched transcriptional activator protein
DBP cDNAs have been obtained by screening a lambda gt 11 liver cDNA expression library with a radiolabeled DNA probe encompassing the albumin promoter element D.
Sequencing of close to full-length cDNAs revealed an open reading frame corresponding to 325 amino acids (Mueller et al., 1990; see corrected sequence, Cell 65, 1991, page 915). DBP dimerizes via a carboxy-terminal leucine zipper and binds DNA via an adjacent basic region (Vinson et al., 1989). The three-dimensional structure of at least one leucine zipper, that of the yeast transcription factor GCN4, has been resolved by X-ray crystallography (O’Shea et al., 1991). Moreover, the amino acid residues located at func-
124 ./. Wuarin and others
Fig. 1. Schematic representation (see O ’Shea et al., 1992) of dimerized coiled coils (leucine zippers) within a DBP homodimer.
The N- to C-polarity of the dimerization helices is from left to right. The right hand panel shows a vertical projection of the coiled coils. The D and A heptad positions containing the hydrophobic amino acids are shown in black and shaded, respectively. Hypothetical salt bridges between glutamic acids (E) and arginines (R) are indicated by arrows (four on each side of the paired amphipathic helices).
tionally strategic positions of leucine zippers have been determined by elegant genetic (Hu et al., 1990) and bio- chemical work (eg. Landschulz et al., 1989, and references therein; O ’Shea et al., 1992). Leucine zipper regions form coiled-coil structures, consisting of parallel amphipathic a - helices that interact via hydrophobic side chains of amino acids located at positions A and D (Fig. IB). W hile no par- ticular D position must be occupied by a leucine, a total of at least two leucines appear to be required within this heptad repeat (Hu et al., 1990). However, not all leucine zippers can form stable interactions with each other. To a large extent, the specificity of dimerization is dictated by salt bonds between amino acids of opposite charges located in positions G and E (see O ’Shea et al., 1992 and references therein). The leucine zipper of DBP (Fig. 1A) is somewhat unusual in two respects. Firstly, it contains only two leucines, the absolute minimum tolerated for dimerization (see above). Secondly, the G and E positions consist of four charged amino acids which, theoretically, could establish as many as eight salt bridges. However, the intrahelical repulsion created by the runs of three consecutive arginines and glutamic acids in the E and G heptad repeat positions, respectively, may also result in a destabilization of the dimerization helices. Indeed, our cross-linking experiments with purified recombinant proteins produced in E. coli suggest a three-fold higher dimerization dissociation con- stant for the DBP zipper as com pared to the zipper of LAP, a C/EBP (Landschulz et al., 1989) related protein that also has affinity for the albumin D site (Descombes and Schi- bler, 1991). In keeping with this observation, replacement of the DBP zipper with the LAP zipper increases the affin- ity of the DBP chimeric protein to its DNA cognate site by about three-fold. Perhaps the dimerization properties of DBP have to be evaluated in the light of its role in diurnal transcription activation (see below). The circadian accu- mulation (see below) and action of this protein may call for a high off-rate of DNA binding to ensure a rapid equilib- rium between specific and non-specific occupancy.
The N-terminal moiety of DBP contains the transcription activation domain(s). In cotransfection experiments with wild-type DBP and DBP target genes, over-expression of the N-terminal two thirds of DBP results in a strong atten- uation of DBP-m ediated transcription activation. This squelching is specific, since transcription activation through LAP is not impaired by an excess of N-terminal DBP sequences (E. F., unpublished results). Thus, the transcrip- tion activation domains of DBP and LAP appear to inter-
act with different targets of the general transcription appa- ratus.
In liver, the majority of DBP is highly phosphorylated (V. O., F. Fleury and U. S., unpublished data). Dephos- phorylation of DBP with acidic potato phosphatase does not appear to influence the equilibrium DNA-binding constant of DBP. W e cannot exclude, however, that the dynamics of DNA binding (Kon and A"0ff) are m odulated by phos- phorylation, as has recently been suggested for the serum response factor SRF (Marais et al., 1992). Alternatively, phosphate groups may be involved in regulating the tran- scription activation potential of DBP.
The DBP gene
The rat gene specifying DBP has recently been isolated and characterized in our laboratory. It contains four exons and three introns and encompasses about 5.6 kb from c a p - to polyadenylation sites (J. W. and E. F., unpublished data).
The promoter is located within a CpG island and is devoid of a canonical TATA box. As has been observed for many promoters of this type, transcription initiation occurs at mul- tiple start sites spread over about 50 nucleotides. The 5' untranslated region of DBP mRNA is extraordinarily long (about 400 nucleotides) and contains three upstream AUGs.
W e remain uncertain whether these sequences are relevant for controlling translation initiation in the animal, but dele- tion of the sequences containing the three upstream AUGs increases the accumulation of DBP both in vivo (transient transfection) and in vitro (reticulocyte lysate) (S. Rufino and U. S., unpublished data).
Circadian and developmental DBP expression DBP accumulates in parenchymal hepatocytes according to a very robust circadian rhythm. The DBP level measured at the time of maximal accum ulation (8 p.m. in Lewis rats) exceeds the one determined at the time of minimal accu- mulation (8 a.m.) by about three orders of magnitude. This rhythm is transcriptionally controlled, free-running and independent of food or water uptake (W uarin and Schibler, 1990). W hile DBP mRNA cycles with the same phase and a similarly strong amplitude in a variety of non-hepatic tissues (lung, spleen, kidney), the DBP protein accumulates to much lower levels in these cell types as compared to
Circadian liver gene expression 125 hepatocytes. As DBP mRNA appears to be associated with
polysomes in all tissues (E. S., unpublished results), it is conceivable that protein stability rather than translation effi- ciency accounts for the differential DBP accumulation in various cell types.
In rodents, circadian rhythmicity commences shortly after weaning (for reviews on circadian rhythms, see Edmunds, 1988). As a consequence, DBP oscillation is only observed in rats older than three weeks (M ueller et al., 1990; Yano et al., 1992). In the liver of younger animals (birth to three weeks), DBP accumulates to very low levels and does not cycle during the day (D. L. and E. S., unpub- lished data).
How is the oscillation of DBP transcription regulated?
As circadian mRNA expression is sim ilar in tissues that do or do not accumulate the protein, DBP itself is unlikely to control its own transcription by positive and/or negative feedback loops. M ore likely, DBP transcription is governed by hormones whose secretion is also rhythmic. Several lines of evidence are compatible with glucocorticoid hormones participating in the “downphase” of circadian DBP expression. In rats, corticosterone shows highest peripheral levels at the dark/light switch (6 p.m. in our animal facil- ity; for circadian glucocorticoid secretion, see Meier, 1975 and references therein), several hours after DBP transcrip- tion rates have climaxed (between 2 p.m. to 4 p.m.). Injec- tion of dexamethasone around noon results in a strong atten- uation of DBP mRNA accumulation during the afternoon.
Moreover, in homozygous fa/fa Zucker rats, which exhibit higher corticosterone levels than their wild-type counter- parts (Guillaume-Gentil et al., 1990), the DBP cycle is phase-shifted towards earlier hours and is reduced in am pli- tude. For the two following reasons, we consider it likely that DBP transcription is directly repressed by glucocorti- coid hormones. (1) In hepatoma cells, dexamethasone addition leads to a rapid extinction of DBP mRNA accu- mulation (E. F., unpublished data). (2) The DBP promoter contains a GRE, as judged from DNase 1 footprinting studies with recom binant glucocorticoid receptor.
In an alternative attem pt to localize cis-acting DBP pro- moter elements, DNase 1 hypersensitive sites in rat liver nuclei were mapped (D. T., unpublished data). Such sites have been observed exclusively within the 1 kb 5' flanking region of the DBP gene. Some of these appear to be more efficiently cleaved in nuclei isolated during the afternoon, when the DBP gene is most active, than in nuclei isolated in the morning, when the DBP gene is not or very weakly transcribed. The importance of these elements for circadian DBP expression is currently being tested in transgenic mice.
Purpose of circadian DBP expression
In order to decipher the physiological significance of cir- cadian DBP expression, one needs to identify bona fide DBP target genes. As m entioned earlier, DBP has been rec- ognized as a transcription factor which binds to an albumin promoter element in vitro. Indeed, in adult rats, albumin transcription appears to fluctuate with a phase com patible with that of DBP accumulation (W uarin and Schibler, 1990;
J. W., unpublished results). However, this circadian tran-
Fig. 2. Circadian accumulation of mRNAs from putative DBP target genes as a function of their half-lives. As a first
approximation, it is assumed that the transcription rates of DBP target genes (shaded areas) follow the accumulation profile of DBP. As demonstrated in Figs 2 and 4, the precise circadian transcription patterns of DBP target genes depends on the affinity of their DBP cognate sites and on the contribution of other, perhaps constitutively expressed transcription factors participating in the regulation of these genes. Accumulation profiles are shown for mRNA half-lives of one to twenty hours.
scription can hardly be physiologically relevant, since due to their long half-lives, neither albumin m RNA nor its pro- tein product accum ulate in a cyclic fashion. In order for a gene product to oscillate during the day, it must be unsta- ble. The impact of the half-life on the accumulation of diur- nally synthesized mRNAs is illustrated by the mathem ati- cal simulations shown in Figs 2 and 3. If one assumes that the transcription rates of DBP target genes parallel the cir- cadian accumulation of DBP (shaded areas in Fig. 2) one can derive the accum ulation profiles for the corresponding mRNAs of any given half-life (shown for T1/2 between 1 hour and 20 hours). Even if the transcriptional amplitude of a gene were infinite, the level of mRNAs with half-lives of more than ten hours would fluctuate by two-fold or less (see Fig. 3, solid circles). However, the transcriptional fluc- tuation of most DBP target genes may only be five- to ten- fold, since constitutively expressed activators in addition to DBP may be involved in controlling their expression. For mRNAs of such genes to cycle, their half-lives would have to be very short (see Fig. 3, open circles). Clearly then, DBP oscillation can be physiologically relevant only for those target genes whose mRNA and protein products are unstable.
Two particularly attractive candidates for DBP target genes are those encoding the liver-enriched enzymes HMG
126 J. Wuarin and others
a (m a x )/a ( m in ) 10
O S(max)/S(min)= 5
• S(max)/S(min)= infinite
'O -.O-o.
>-0-0-0
5 10 15
T1/2 (h o u rs)
2 0
Fig. 3. Amplitudes of mRNA accumulation as a function of half- lives and amplitude of synthesis. Solid circles: Amplitudes of the accumulation (a) of mRNAs whose amplitude of synthesis (S) is infinite, such as shown in Fig. 2. Open circles: amplitudes of the accumulation (a) of mRNA whose amplitude of synthesis (S) is 5- fold. The amplitudes (maximal/minimal accumulation) were determined graphically from accumulation profiles such as shown in Fig. 2.
Co A reductase and cholesterol 7 -a hydroxylase, which cat- alyze the rate-limiting steps in cholesterol synthesis and cholesterol conversion to bile acids, respectively. Enzym e activities as well as mRNAs from these genes accumulate according to a robust circadian rhythm with am plitudes of around 10-fold and a phase com patible with that of DBP accumulation (Clarke et a l, 1984; Noshiro et al., 1990; D.
L. and J. W., unpublished results). Furthermore, and in keeping with DBP accumulation, circadian expression of these enzymes is not detected until after weaning. Genomic clones encompassing the promoter regions of both of these genes have been obtained and are currently being examined for the presence of DBP-binding sites. Thus far, such ele- m ents have been discerned within the cholesterol 7 -a hydroxylase promoter. Furthermore, in cotransfection experiments, a CAT reporter gene driven by this promoter is strongly activated by DBP. W hile none of the data thus far obtained prove that the circadian expression of choles- terol 7 -a hydroxylase and HM G CoA reductase is governed by DBP, this transcription factor appears to be a likely player in the control of cholesterol homeostasis. In the model we are currently testing, DBP would sim ultaneously activate the diurnal production of bile acid and cholesterol.
Such a coordination may be pivotal, since the massive cho- lesterol utilization during the activity period (evening and night hours for rats and mice) may call for a large, sim ul- taneous increase in its synthesis.
Conclusions and perspectives
DBP, a liver-enriched transcriptional activator of the bZip protein family, accumulates according to an extraordinarily strong circadian rhythm. Preliminary results suggest that circadian DBP expression may be controlled, at least in part, by the cyclic secretion of glucocorticoid hormones.
Like most (if not all) circadian activities in mammals, cor-
ticosterone synthesis and secretion is governed by the suprachiasmatic nucleus (SCN), a small brain structure located above the optical chiasma. Circadian outputs are entrained in the SCN by external time cues, such as light/dark phases. Once entrained, such outputs are free- running and persist for extended time periods, until the clock is reset by new time cues (for references on the cir- cadian pacem aker SCN see Kornhauser et al., 1992; M eijer and Rietveld, 1989). In the case of adrenal hormone secre- tion, the SCN is believed to set the pace of CRF secretion in the hypothalamus. This in turn may dictate the rhythmic release of ACTH from the anterior pituitary gland, eventu- ally resulting in a cyclic secretion of corticosterone in the adrenal gland (M eijer and Rietveld, 1989).
Deciphering of the physiological purpose of DBP oscil- lation will require the unequivocal identification of down- stream genes. At present we are testing the hypothesis that one of the DBP functions is related to cholesterol hom e- ostasis, because the rate-limiting enzymes in cholesterol synthesis (HMG coA reductase) and utilization (cholesterol 7 -a hydroxylase) both fluctuate with a circadian phase com - patible with that of DBP accumulation. Clearly, the possi- ble role of DBP in cholesterol metabolism will remain hypothetical until scrutinized by a thorough genetic analy- sis. The tools required for this endeavor have recently becom e available. In the case of DBP, both gain-of-func- tion (constitutive expression of DBP throughout the day) and loss-of-function (DBP gene knockout by homologous recombination) experiments should now be technically fea- sible.
W e were surprised to observe that, while transcription of
Fig. 4. Circadian transcription of two hypothetical DBP target genes containing DBP cognate sites with different affinities. The circadian DBP accumulation profile is schematically shown as a solid line. Target gene A is assumed to contain a 10-fold stronger DBP cognate site (equilibrium dissociation constant A'd=X) than gene B (equilibrium dissociation constant ATd=10X). As a consequence, half-saturation of the DBP site in gene B would require 10-fold higher DBP concentrations than that of its counterpart in gene A. Therefore, maximal transcriptional activity of gene A would be expected to persist for a longer circadian period than that of gene B. The periods of maximal transcription for genes A and B are depicted as black bars. The genes encoding cytochrome P450 CYP2C6 and cholesterol 7 -a hydroxylase constitute putative candidates for the gene classes A and B, respectively.
Circadian liver gene expression 127 certain genes, such as the one encoding serum albumin,
cycles during the day, the accumulation of their products remains relatively constant. Apparently, diurnally expressed transcription factors like DBP may be used for genes whose products oscillate, such as HMG coA reductase and cho- lesterol 7-a hydroxylase, and genes whose products accu- mulate constitutively, depending on their stability.
The relative affinity of the DBP sites for their cognate factor may be another important parameter in determining the temporal pattern of putative DBP target gene expression. As illustrated by the cartoon shown in Fig. 4, DBP target genes with low affinity sites may be maximally expressed during a short circadian time window, since the critical DBP concentrations required for efficient occu- pancy may only be reached during a few hours during the day. In contrast, genes with high affinity sites are expected to be expressed during much longer time periods, as even low DBP levels would suffice to fill the respective recog- nition sequences. For example, the cytochrome P450 gene CYP2C6 contains a DBP site within its promoter that binds E. coli-derived recombinant DBP with a 17-fold lower Kc\
than the albumin D promoter element (Yano et al., 1992).
Run-on transcription experiments with nuclei isolated at four hour intervals around the clock yielded more or less constant transcription rates for the CYP2C6 gene (D. L., unpublished data). While further experiments are required to identify this gene as a bona fide DBP target gene, these considerations exemplify the versatile potentials of oscil- lating transcription factors: circadian DBP accumulation may result in strong, weak or no oscillation of mRNAs and proteins issued from downstream genes, depending on the relative affinities of their DBP-binding sites and the stabil- ities of their products.
We would like to thank Prof. G. Wanner, Department of Applied Mathematics, University of Geneva, for preparing the computer program used in Fig. 2. This research was supported by the Swiss National Science Foundation and the State of Geneva.
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