Supplementary Tables Table S1. Normalized expression levels and ratios revealed by comparative transcriptome analysis (RNA-seq) of the Rom

In the case of the present analysis, four different approaches (Figure 4) were used to evaluate sites of expression and patterns of co-regulation of R-genes in sugarcane, consider-

DPV: duck plague virus; CHv: DPV Chinese virulent strain; CHa: attenuated DPV vaccines; HSV: herpes simplex virus; BHV-1: bovine herpes virus; HCMV: human cytomegalovirus;

In this case, Mfold correctly completes the structure and identifies the fourth stem that is missing in caRNAc output. This leads to the typical clover leaf structure (the

Osvaldo Reis Júnior , Universidade Estadual de Campinas, Campinas, Brazil Jaime Hikaru Mishima , Universidade Estadual de Campinas, Campinas, Brazil Suzana Tiemi Ivamoto ,

⁕paired-end reads +assembly : learn the distribution from reads mapped to single isoform genes. ⁕paired-end – no assembly : genomic length of de paired-end reads (without

For Esca-diseased vines, leaf samples were collected from both asymptomatic and symptomatic shoots of the same vines, respectively, annotated Ds– and Ds+ (right side of the

marked differences compared to cis-eQTL identified using genetic link- age. 1) INRA, UMR1348 Pegase, Rennes, France; 2) Agrocampus Ouest, UMR1348 Pegase, Rennes, France; 3)

The log2 fold-changes calculated for all genes in DESeq pairwise comparisons between (i) gametocytes and mero- zoites or (ii) gametocytes and sporozoites are provided (Additional