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Deciphering the genetic diversity of landraces with high-throughput SNP genotyping of DNA bulks: methodology and application to the maize 50k array Mariangela Arca

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Academic year: 2021

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Figure

Table 1: Expected frequencies of allele B for the nine controlled pools obtained by varying the proportions of leaf weights  of three inbred lines (L1, L2, L3)  according to their genotypes at a bi-allelic SNP coded A/B
Table 2: Mean absolute error (MAE) in frequency estimation for 1,000 SNPs used to calibrate logistic regression  equations
Table 3: Sampling error estimated by numerical calculation for one or two biological replicates with independent sampling of 15 or 100 individuals within landraces
Figure 1: Two-step approach for estimating allelic frequency in DNA pools, exemplified by marker PZE-101005765
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