A L I M E N T A T I O N
URGI
Gestion des données de séquençage (GnpIS)
URGI
Gestion des données de séquençage (GnpIS)
Hadi Quesneville
« Séminaire de restitution de l’étude sur l’utilisation des données de séquençage de ressources génétiques pour l’agriculture et l’alimentation. »
Paris, Oct 8, 2018
Hadi Quesneville
A bioinformatic unit for crop improvement
A bioinformatic unit for crop improvement
Genome • • Annotation Transcriptome
• SNP / Structural variant
Genetics • Genetic maps
• Genetic markers
• Genetic resources
Phenotypes • • GxE QTL maps
• GWAS
URGI
Data & tools URGI DB
« GnpIS »
Plant scientific challenge Plant scientific challenge
Genome
x Environment x Management
practices
Scientific challenge
Study of Complex interactions
Phenotype =
Traits Traits Individual Individual Population / Genetic panel
Population / Genetic panel
Species Species
Genome Genome Environments
Environments Plants
Plants
Genetic cards Genetic
cards
Genetic markers Genetic markers
n
n
n
n n n
n
1
Hadi Quesneville
Genetic Association Genetic Association
X Parents
Descendants
Genetic Association Genetic Association
X Parents
Descendants
We use genetic markers
Hadi Quesneville
Genetic Association Genetic Association
X Parents
Descendants
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G A T C G
We use genetic markers But …
we only see genetic markers
An Information system for Plant and Pests genomics and genetics
An Information system for Plant
and Pests genomics and genetics
Hadi Quesneville 8
Genetic resources
Genetic resources
Markers
Markers
Hadi Quesneville
Genomes
Genomes
Genetic association
Genetic association
Hadi Quesneville
