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species complexes: inference from natural populations
Myriam Heuertz
To cite this version:
Myriam Heuertz. Evolutionary processes in non-model tree species and species complexes: inference from natural populations. Life Sciences [q-bio]. Université de Bordeaux, 2019. �tel-02790118�
Mémoire présenté à l’Université de Bordeaux,
Ecole doctorale Sciences et Environnements
Spécialité Ecologie évolutive, fonctionnelle et des communautés
par
Myriam Heuertz
En vue de l’obtention de l’Habilitation à diriger des recherches
Evolutionary processes in non-model tree species and species
complexes: inference from natural populations
Membres du jury
Prof. Pilar Catalán, Professeur des Universités, Universidad de Zaragoza Dr. Thomas Couvreur, Directeur de recherche, IRD, Montpellier
Dr. Antoine Kremer, Directeur de recherche émérité, Biogeco, INRA-Univ. Bordeaux Dr. Marta Benito Garzón, Chargée de recherche HDR, Biogeco, INRA-Univ. Bordeaux Dr. Jérôme Chave, Directeur de recherche, EDB, CNRS, Toulouse
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Contents
1. Acknowledgements ... 5
2. Curriculum vitae ... 7
3. Introduction ... 27
3.1. Biographical sketch and research context ... 27
3.2. Evolutionary processes in forest trees ... 28
3.3. A statistical framework for evolutionary inference: the coalescent ... 32
4. Research contributions ... 41
4.1. Biogeography and phylogeography ... 41
4.2. Population genetics and genomics ... 55
4.3. Development of genetic resources and contributions in applied conservation genetics .... 71
5. Eco-evolutionary processes in tree species complexes: ongoing work and perspectives ... 75
5.1. Evolutionary relationships and genomic signatures of local adaptation in tropical tree species complexes... 75
5.2. Local-scale adaptation in tropical tree species complexes: an integrative approach ... 82
5.3. Eco-evolutionary dynamics and implications of commonness vs. rarity in Amazonian tree congeners ... 85
5.4. Eco-evolutionary resilience of forest species communities and provision of ecosystem services ... 87
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1. Acknowledgements
My life as a researcher has given me the opportunity to meet and work with fantastic colleagues, from a diversity of places and with a diversity of backgrounds. It is clear that I would not have reached the point of completing this report without the collaboration with, and the support from these colleagues, including undergraduate students, PhD students, postdocs and senior colleagues. So here every colleague and collaborator is thanked, right at the start!
At this stage, my most heartfelt thanks go to my mentors for the trust, confidence and support they have given me, and the important roles they have played in my career choices and career development, especially Xavier Vekemans, my PhD thesis supervisor, and Olivier Hardy, with whom I embarked on the African rainforest adventure as a young postdoc. Santiago González-Martínez also belongs to these mentors: despite never having been my boss, his support was decisive for me to reach a level of increasing maturity in my researcher career after my first postdocs. He has also kindly supervised my progress during the writing of this report, and I express my profound gratitude to him, for his support and continued encouragements.
I would also like to take the opportunity to thank all my students, for all the fruitful interactions, stimulating discussions, disagreements, paper rejections we have been through together. Sometimes students are too fast for me… sometimes progress is slow; everybody is unique and special. All these experiences make you learn and grow, eventually! Special thanks go to my PhD students Guillaume Koffi, Katha Budde, Paloma Torroba-Balmori and Sylvain Schmitt, and to the many MSc and PhD students with whom I collaborated across the years. Thanks also to my first postdoc, Sanna Olsson, for always believing in the Symphonia project, despite all the difficulties encountered.
My international researcher career would also not have been possible without the welcoming, hosting, quality of human interactions and support I experienced from colleagues, supervisors, heads of units, in all the research institutions I have been working, distributed across six countries, not counting those places where I did research stays: the CRP-Gabriel Lippmann in Luxembourg, the Université Libre de Bruxelles, Uppsala University, INIA-CIFOR in Madrid, Real Jardín Botánico-CSIC in Madrid, the University of Fribourg and INRA UMR Biogeco. Thanks to all my colleagues in these places, who have contributed to building the environment in which it is possible to develop as a scientist. I would also like to take the opportunity to thank you, who have accepted to serve as evaluators of my HDR report. I know you are busy professionals, and you have accepted this duty nevertheless. I sincerely thank you for having done so, and hope that we will have the opportunity for a good discussion on this report. Many thanks in advance for all your comments and suggestions.
Thanks also to all my friends, especially those eager to share a few km running or some walls climbing. The moments with you have been precious; a welcome escape, essential for balance in life!
Finally, a huge thank you goes to my fantastic family, for always believing in me and creating the conditions in which it is possible to be both a mom and a professional.
Thanks to you all!
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2. Curriculum vitae
Myriam Heuertz, Plant population geneticist Biogeco INRA – Univ. Bordeaux
69, route d'Arcachon F-33610 Cestas, France
Contact: myriam.heuertz@inra.fr +33 5 35 38 5329 (office) +33 780 41 3385 (mobile)
Biographical sketch and research interests Biographical sketch and research interests Biographical sketch and research interests Biographical sketch and research interests
I am a research scientist (CRCN) at INRA, mixed research unit Biogeco – Biodiversity, Genes and Communities – since December 2014. I hold a PhD in Science from the Université Libre de Bruxelles, Belgium (2003) and have postdoctoral experience in Sweden, Luxembourg, Belgium, Switzerland and Spain, where I held a 5-year ‘Ramón y Cajal’ Independent Researcher position (2010-2014).
My research focuses on ecological population genetics of plants, mostly trees, from temperate and tropical regions. I use molecular tools including high-throughput sequencing to unveil evolutionary processes within species and in communities of closely related species. I investigate species delimitation and population demographic history and use genetic data in conjunction with phenotypes and microenvironmental data to characterize drivers of adaptive evolution.
I have participated in 37 national and international research and development projects funded through competitive calls, in 10 of them as principal investigator. I have published 55 papers in journals included in the Science Citation Index, 24 of them as first or senior author. My H-index is 28 by Google scholar and my ORCiD ID is orcid.org/0000-0002-6322-3645. I have supervised one Bachelor student, seven Master students, two PhD students and two postdocs and I am currently supervising two PhD students and one Master student. I have contributed to the supervision of ten PhD students, leading to co-authorship in publications. I am associate editor of Molecular Ecology and Plant Ecology and Evolution and recommender for Peer Community in Evolutionary Biology.
Education Education Education Education
Université Libre de Bruxelles
PhD in Biological Sciences, in collaboration with CRP - Gabriel Lippmann, Luxembourg
Brussels, Belgium 2003
Université Libre de Bruxelles
Diplôme d'Etudes Approfondies in Science
Brussels, Belgium 2001 Université Libre de Bruxelles
Licence in Biological Sciences
Brussels, Belgium 1998 Centre Universitaire Luxembourg
Certificat d'Etudes Scientifiques
Luxembourg 1995 Professional Professional Professional
Professional appointmentsappointmentsappointmentsappointments
Institut National de Recherche Agronomique, INRA
Research Scientist (Chargé de Recherche, Catégorie Normale, CRCN), Biogeco, INRA – Univ. Bordeaux
Cestas, France Since Dec 2014
Instituto Nacional de Investigación Agraria, INIA-CIFOR Ramón y Cajal Independent Researcher
Biodiversity hotspots: evolution and conservation of forest trees
Madrid, Spain 2010 – 2014
Université de Fribourg
Senior Marie Curie Intra-European Fellow : Recent evolution in an African biodiversity hotspot
Fribourg, Switzerland Jul 2013 – Aug 2014
8 Real Jardín Botánico-CSIC
Postdoc, JAE Doc Program, Ministry of Science and Innovation Incipient speciation in Antirrhinum charidemi
Madrid, Spain Jun – Dec 2009
Instituto Nacional de Investigación Agraria, INIA-CIFOR
Postdoc, EU-Project NOVELTREE – Adaptive evolution in Pinus pinaster
Madrid, Spain Apr – May 2009 Estudios y Proyectos LINEA
Biologist, consultant
Valladolid, Spain Jan – Apr 2009 Université Libre de Bruxelles
Research associate, Belgian National Fund for Scientific Research, FNRS Phylogeography of African lowland rainforest tree species
Brussels, Belgium Oct 2005 – Jan 2009
CRP-Gabriel Lippmann
Scientist – Grapevine genetic diversity in countries bordering the Black Sea
Luxembourg, Luxbg Nov 2004 – Oct 2005 Uppsala University
Postdoc, Ministry of Science and Education, Luxembourg Climatic adaptation in Norway spruce
Uppsala, Sweden Mar 2003 – Oct 2004
CRP-Gabriel Lippmann
Internship – Population genetics of common ash
Luxembourg, Luxbg Feb – Mar 2003 CRP-Gabriel Lippmann
PhD student, Ministry of Science and Education, Luxembourg
Population genetics of common ash: a focus on southeastern Europe
Luxembourg, Luxbg Nov 1999 – Oct 2002
CRP-Gabriel Lippmann
Project scientist - Population genetics of broadleaves in southeastern Europe
Luxembourg, Luxbg Nov 1998 – Oct 1999
Scientific visits (1 month or longer), g Scientific visits (1 month or longer), g Scientific visits (1 month or longer), g
Scientific visits (1 month or longer), grants and awards rants and awards rants and awards rants and awards
Université Libre de Bruxelles
Collaborateur scientifique mandate, Faculty of Science
Brussels, Belgium Since 2009 Instituto Nacional de Investigación Agraria, INIA-CIFOR
Visiting scientist, grant of Fonds National de la Recherche, Belgium (9 months)
Madrid, Spain Jan – Sep 2008 University of Yaoundé
Visiting scientist, grant of Fonds National de la Recherche, Belgium (1 month)
Yaoundé, Cameroon Jul 2007 Centre de Recherches Médicales
Visiting scientist, grant of Fonds National de la Recherche, Belgium (1 month)
Franceville, Gabon Jul 2006 Royal Botanic Gardens Kew
Visiting scientist, EU SYNTHESYS grant (2 months)
London, UK, Jan – Feb 2006 University of British Columbia
Scientific training grant of the Rotary Club Luxembourg (1 month)
Vancouver, Canada May 2000
Consiglio Nazionale delle Ricerche, IMPF Florence, Italy,
Oct – Nov 2000
Consiglio Nazionale delle Ricerche, IMPF Florence, Italy
Sep 1999 Grants for the promotion of studies and research, Documentation Centre for Higher Studies (CEDIES), Luxembourg. 1st cycle: 1996, 2nd cycle: 1998 (2000€), 3rd cycle: 2003 (6000€).
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Research projects granted and participation in research projects Research projects granted and participation in research projects Research projects granted and participation in research projects Research projects granted and participation in research projects
37. RARETREE – Eco-evolutionary implications of commonness vs. rarity in Amazonian tree congeners. Labex CEBA (ANR [Agence Nationale pour la Recherche], France), annual project. 2019-2020. 15,000€. PI: Myriam Heuertz.
36. G-BIKE – Genomic BIodiversity Knowledge for Resilient Ecosystems. EU COST Action CA18134, March 2019 – March 2023. PI: Cristiano Vernesi. Leader of WG3 on Genomics and ecosystem services: Myriam Heuertz. 35. LOCOCAP – Contribution to the development of low-cost sequence capture to study eco-evolutionary
processes. 2019. Projet innovant INRA, Dept. EFPA. 9,800 €. PI: Myriam Heuertz.
34. ASH-ADAPT – Evolutionary potential of natural Fraxinus excelsior populations challenged by novel pests and pathogens. 2019-2021. PI: Lene Rostgaard Nielsen, Univ. Copenhagen. 5,000,000 DEK.
33. RHYVON - The role of natural hybridization in plant evolution: bridging the gap between theoretical models and empirical data. Plan Nacional I+D+I, Spain, 2018-2021. PI: Gonzalo Nieto Feliner.
32. LECYTOMICS - Species boundaries and ecological genomics in the face of global change in the Brazil nut family (Lecythidaceae), GUYAMAZON program for France – Brazil collaborative research and training, 2019 – 2020. 25.000 €, PI: Myriam Heuertz.
31. ADAPTSHARE – Drought stress in tropical ecosystems: adaptive allele sharing in tree species complexes. Idex Univ. Bordeaux. Sep. 2016 – Aug. 2018. Two-year postdoctoral contract, incl. research funds of 20,000€. PI: Katharina B. Budde, host: Myriam Heuertz.
30. ECOGENPIN – Ecological genomics of local adaptation in maritime pine, an iconic conifer with large ecological and economic value in south-western Europe. Chaire d’installation Idex Univ. Bordeaux. Oct. 2016 – Oct. 2019. 198,249 €. PI: Santiago González-Martínez.
29. COLLEVOL – Testing Collective Evolution in Neotropical Trees. Labex CEBA (ANR [Agence Nationale pour la Recherche], France), annual project. 2016-2017. 20,000€. PI: Myriam Heuertz.
28. NEOTROPHYL – Inferring the drivers of Neotropical diversification using an integrative macroevolutionary approach. Labex CEBA (ANR, France), strategic project. 2016-2019. 250,000 € (20,000 € to INRA UMR Biogeco). PI: Frédéric Delsuc. Participants: ISEM, EDB, CNRS Guyane, INRA-BioGeCo.
27. REVOL – Spatially explicit mechanisms of Recent EVOLution in an African biodiversity hotspot. European Commission, FP7-PEOPLE-2012-IEF, Marie Curie Action. Jul. 2013 – Aug. 2014. 149,546€. PI: Myriam Heuertz. Hosted at the University of Fribourg, Switzerland, host: Christian Lexer.
26. AFFLORA –The assembly of African floras from lineages to populations: effects of historical climate changes and species ecology. Plan Nacional de I+D+I, Spain. Jan. 2013 – Dec. 2015. 193,050€. PI: Myriam Heuertz. Participants: Real Jardín Botánico-CSIC Madrid, INIA-CIFOR, ULB Brussels, INRA, Université de Yaoundé 1, CNARP Madagascar.
25. TIPTREE – Scenarios for forest biodiversity dynamics under global change in Europe: identifying micro-evolutionary scale tipping points. ERAnet BiodivERsA-2. 2012-2015. 35,000€ to INIA-CIFOR. PI: Sylvie Oddou-Muratorio. Participants: INRA-URFM Avignon, Akdeniz University Antalya, INIA-CIFOR, European Forest Institute, ONF Fontainebleau, CNRS-UM Montpellier, INRA-BioGeCo Bordeaux, INRA-Ecofog Kourou, University of Marburg, Uppsala University, CNR-IGV Florence, Fed. of Swedish Forest Owners.
24. FLAG – Génétique écologique des arbres forestiers : interactions entre flux de gènes et variabilité environnementale dans la détermination de l’adaptation locale et du potentiel d’adaptation. ANR, France. 2012-2015. 306,065€. PI: Ivan Scotti. Coordinator for INIA-CIFOR: Myriam Heuertz. Participants: Ecofog Kourou, URFM Avignon, AGPF Orléans, Universidade Federal de Goiás Brazil, INRA-BioGeCo Bordeaux, CNR-IGV Florence.
23. Ash dieback in Norway – Cause, Impact and Control. The Research Council of Norway. 2011 – 2014. 5,050,000 NOK, 19,850€ to INIA-CIFOR. PI: Halvor Solheim. Coordinator for INIA-CIFOR: Myriam Heuertz. Participants: Norwegian forest and landscape institute, INIA-CIFOR, Swedish University of Agricultural Sciences, Skov & landskap (Denmark).
22. Evolution of the personate flower: phylogenetic and phylogeographic analyses of the tribe Antirrhineae. Plan Nacional de I+D+i, Spain. Jan. 2010 – Dec. 2012. 84,700€. PI: Pablo Vargas. Participants: Real Jardín Botánico de Madrid, INIA-CIFOR, John Innes Centre (Edinburg, UK).
21. FLUGAL – Interaction between gene flow and local adaptation in forest tree species: new analytical and experimental approximations. Plan Nacional de I+D+i, Spain. Jan. 2010 – Dec. 2012. 207,757€. PI: Juan José Robledo Arnuncio. Participants: INIA-CIFOR.
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20. Biodiversity hotspots: evolution and conservation of forest trees. Funding: Ministerio de Ciencia e Innovación, Ramón y Cajal project. Jan. 2010 – Dec. 2014. 10,000€. PI: Myriam Heuertz. Hosted at INIA-CIFOR.
19. LINKTREE – Linking genetic variability with ecological responses to environmental changes: forest trees as model systems. Funding: BiodivERsA-ERANET, Jun. 2009 – Jun. 2012. 1,359,625€. PI: Santiago González-Martínez. Participants: INIA-CIFOR, INRA-Bordeaux, INRA-Avignon, Uppsala University, Universität Marburg. 18. VAMPIRO – Efectos demográficos y selectivos del fuego en plantas Mediterráneas: variación molecular y pirofitismo. Ministerio de Ciencia e Innovación, Jan. 2009 – Dec. 2011. 181,379€. PI: Santiago González-Martínez. Participants: INIA-CIFOR, Universidad de Cádiz, CIDE – CSIC, Univ. Libre de Bruxelles.
17. Understanding and conserving plant biodiversity across tropical forest biomes: a multi-level phylogenetic approach based on DNA sequences. French National Sequencing Centre Génoscope. 2008 – 2009. 370,000€. PI: Doyle McKey. Participants: Université Libre de Bruxelles, Université Paul Sabatier Toulouse, CNRS Montpellier.
16. Phylogeography and genetic diversity of African lowland rainforest trees: impact of Pleistocene climatic changes. Fonds National pour la Recherche Scientifique (FNRS) and Fonds pour la Recherche Fondamentale Collective (FRFC), Belgium. Oct. 2007 – Sep. 2009. 10,500€. PI: Myriam Heuertz. Université Libre de Bruxelles. 15. Développement de la plateforme de génétique moléculaire du Département de Biologie des Organismes: acquisition d’équipements. Fonds d’Encouragement à la Recherche (FER), Université Libre de Bruxelles, Belgium. 2007 – 2008. 20,595€. PIs: Serge Aron/Myriam Heuertz. Université Libre de Bruxelles.
14. IFORA – Les îles forestières africaines : modèle d’une nouvelle approche de la dynamique de structuration de la biodiversité. ANR, France. 2006 – 2009. 687.920€. PI: Michel Veuille. Participants: UMR 5202, CNRS-MNHN Paris + EPHE, CBGP Montpellier, Forêts naturelles CIRAD, Univ Montpellier 2-CEFE UMR 5175, IRD – UR 072 Gif, Probabilités UMR 7599 INRA, UMR 1272 CNRS LSCE Gif, Université Libre de Bruxelles, Herbier National Yaoundé (Cameroon), Université Yaoundé 1 (Cameroon), IRET Makokou (Gabon).
13. Genetic structure, gene flow and scale of local adaptation in tropical trees from Central Africa – What is the relative importance of selection and gene dispersal on genetic diversity organization? Fonds National de la Recherche Scientifique, Belgium, and Fonds pour la Recherche Fondamentale Collective (FRFC). 2007 – 2009. 100.000€. PIs: Olivier Hardy/Jean-Louis Doucet. Participants: Université Libre de Bruxelles, Faculté des Sciences Agronomiques de Gembloux (Belgium).
12. Diversidad y conservación de recursos genéticos de coníferas en la Península Ibérica y Marruecos. Agencia Española de Cooperación Internacional – PCI. Jan. 2006 – Dec. 2006. 8.400€. PI: Santiago C. González Martínez. Participants: INIA-CIFOR; Université Cadi Ayyad, Morocco.
11. Phylogéographie et diversité génétique des ligneux des forêts de plaine d’Afrique centrale. Fonds National de la Recherche Scientifique, Belgium. 2005 – 2007. 30.000€. PI: Olivier Hardy. Participants: Université Libre de Bruxelles (Belgium).
10. Phylogéographie et diversité génétique des ligneux des forêts de plaine d’Afrique centrale. Fonds National de la Recherche Scientifique, Belgium. 2005 – 2008. Three year research associate contract plus research funding of 10,000€. PI: Myriam Heuertz.Participants: Université Libre de Bruxelles, Belgium.
9. Plant genetic resources in southeastern Europe III: grapevine genetic resources: Luxembourg Ministry of Foreign Affairs and International Plant Genetic Resources Institute (IPGRI). 2004-2006. PI: Jean François Hausman. Participants: Institute of Horticulture, Viticulture and Oenology, Georgia; IPGRI, Italy; Università degli studi di Milano, Italy; Institute of Viticulture and Wine-making, Azerbaijan; Magarach Institute for Vine and Wine, Ukraine; National Institute for Viticulture and Oenology, Moldova; CRP-GL, Luxembourg; Armenian Academy of Viticulture; Federal Centre for Breeding Research on Cultivated Plants, Germany; Krymsky Experimental Breeding Station, Russia; Kuban State Agrarian University, Russia.
8. Genetic basis of budset in Norway spruce. Carl Tryggers Foundation, Sweden. 2005 – 2006. 378.000 SEK. PI: Niclas Gyllenstrand. Participants: Uppsala University, Swedish University of Agricultural Sciences.
7. Cooperation INRA-FORMAS (Institut Nacional de la Recherche Agronomique, France - Swedish Research Council for Environment, Agricultural Sciences and Spatial Planning). Swedish Research Council for Environment, Agricultural Sciences and Spatial Planning. 2004 – 2005. 100,000 SEK. PI: Martin Lascoux. Participants: Uppsala University, Sweden; INRA, France.
6. Range shift and adaptive response in Scandinavian Picea abies populations. Philip Sörensen Foundation, Sweden. 2004 – 2006. 150.000 SEK. PI: Martin Lascoux. Participants: Uppsala University.
5. TREESNIPS – Developing Single Nucleotide Polymorphic (SNP) Markers for Adaptive Variation in Forest Trees. European Union, 2002 – 2006. QLK3-CT2002-01973. 1,957,622€. PI: Outi Savolainen. Participants: University
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of Oulu and Finnish Forest Research Institute, Finland; INRA, France; UNIUD, Italy; INIA, Spain; University of Uppsala, Sweden; SCRI, United Kingdom.
4. Plant genetic resources in southeastern Europe II: forest genetic resources and grapevine genetic resources. Luxembourg Ministry of Foreign Affairs and International Plant Genetic Resources Institute (IPGRI). 2001 – 2003. PI: Jean François Hausman. Participants: Forest Research Institute Bulgaria; SICAS, Romania; University of Chisinau, Moldova;Ukrainian Research Institute of Forestry and Forest Imporovement, Ukraine; CRP-GL Luxembourg.
3. FRENE – Contribution to the conservation of forest genetic resources: study of the genetic diversity of the common ash. Ministère de l’Education Nationale, Luxembourg. 1999 – 2002. 20,000€. PI: Myriam Heuertz. Participants: Université Libre de Bruxelles, Belgium; CRP-Gabriel Lippmann, Luxembourg.
2. CYTOFOR – Measuring molecular differentiation of European deciduous forests for conservation and management. European Union, Agriculture and Fisheries (FAIR) specific RTD programme, CT97-3795. 1998 – 2001. PI: Rémy Petit. Participants: INRA, France; University of Edinburgh, United Kingdom; Office National des Forêts Ardon, France; UDESAM Marseille, France; Uppsala University, Sweden; LMU-Muenchen, Germany); CNR Firenze, Italy; CNR Porano, Italy.
1. Plant genetic resources in southeastern Europe: forest genetic resources. Luxembourg Ministry of Foreign Affairs and International Plant Genetic Resources Institute (IPGRI). 1998 – 2000. PI: Lucien Hoffmann. Participants: Forest Research Institute Bulgaria; SICAS, Romania; University of Chisinau, Moldova; CRP-GL Luxembourg.
Publications Publications Publications Publications
Publications in journals included in the Science Citation Index
55. Aissi A, Beghami Y, Heuertz M (2019) Le chêne faginé (Quercus faginea, Fagaceae) en Algérie : potentiel germinatif et variabilité morphologique des glands et des semis. Plant Ecology and Evolution (in press). 54. Vargas OM, Heuertz M, Smith SA, Dick CW (2019) Target sequence capture in the Brazil nut family
(Lecythidaceae): Marker selection and in silico capture from genome skimming data. Molecular Phylogenetics and Evolution, 135: 98–104.
53. Goncalves AL, García M, Heuertz M, González-Martínez SC (2019) Demographic history and spatial genetic structure in a remnant population of the subtropical tree Anadenanthera colubrina var. cebil (Griseb.) Altschul (Fabaceae). Annals of Forest Science 76, 18.
52. Mairal M, Caujapé-Castells J, Pellissier L, Jaén-Molina R, Álvarez N, Heuertz M, Sanmartín I (2018) A tale of two forests: ongoing aridification drives population decline and genetic diversity loss at continental scale in Afro-Macaronesian evergreen-forest archipelago endemics. Annals of Botany 122,1005–1017.
51. Torroba-Balmori MP, Budde KB, Heer K, González-Martínez SC, Olsson S, Scotti-Saintagne C, Casalis M, Sonké B, Dick CW, Heuertz M (2017) Altitudinal gradients, biogeographic history and microhabitat adaptation affect fine-scale spatial genetic structure in African and Neotropical populations of an ancient tropical tree species. PLOS ONE 12(8), e0182515.
50. Nieto Feliner G, Álvarez Fernández I, Fuertes Aguilar J, Heuertz M, Marques I, Moharrek F, Piñeiro R, Riina R, Rosselló JA, Soltis P, Villa Machío I (2017) Is homoploid hybrid speciation that rare? An empiricist’s view. Heredity 118, 513–516.
49. Holliday JA, Aitken SN, Cooke JEK, Fady B, González-Martínez SC, Heuertz M, Jaramillo-Correa J-P, Lexer C, Staton M, Whetten RW, Plomion C (2017) Advances in ecological genomics in forest trees and applications to genetic resources conservation and breeding. Molecular Ecology 26(3), 706–717.
48. Budde KB, González-Martínez SC, Navascués M, Burgarella C, Hernández-Serrano A, Lorenzo Z, Zabal-Aguirre M, Vendramin GG, Verdú M, Pausas JG, Heuertz M (2017) Increased fire frequency promotes stronger spatial genetic structure and natural selection at regional and local scales in Pinus halepensis Mill. Annals of Botany 119(6), 1061–1072.
47. Tollefsrud MM, Myking T, Sønstebø JH, Hietala A, Heuertz M (2016) Genetic structure in the northern range margins of common ash, Fraxinus excelsior L. PLOS ONE 11, e0167104.
46. Forrest A, Escudero M, Heuertz M, Wilson Y, Cano E, Vargas P (2017) Testing the hypothesis of low genetic diversity and population structure in narrow endemic species: the endangered Antirrhinum charidemi (Plantaginaceae). Botanical Journal of the Linnean Society 183(2), 260–270.
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45. Ley A, Heuertz M, Hardy OJ (2017) The evolutionary history of central African rain forest plants: phylogeographical insights from sister species in the climber genus Haumania (Marantaceae). Journal of Biogeography 44(2), 308–321.
44. Olsson S, Seoane-Zonjic P, Bautista R, Claros MG, González-Martínez SC, Scotti I, Scotti-Saintagne C, Hardy OJ, Heuertz M (2017) Development of genomic tools in a widespread tropical tree, Symphonia globulifera L.f.: a new low-coverage draft genome, SNP and SSR markers. Molecular Ecology Resources 17(4), 614–630. 43. Macaya-Sanz D, Heuertz M, Lindtke D, Lexer C, González-Martínez SC (2016) Causes and consequences of
large clonal assemblies in a poplar hybrid zone. Molecular Ecology 25, 5330–5344.
42. Ribeiro P, Souza ML, Muller LAC, Ellis VA, Heuertz M, Lemos-Filho JP, Lovato MB (2016) Climatic drivers of leaf traits and genetic divergence in the tree Annona crassiflora: a broad spatial survey in the Brazilian savanna. Global Change Biology 22(11), 3789–3803.
41. Correa Ribeiro P, Lemos-Filho JP, Buzatti RS, Lovato MB, Heuertz M (2016) Species-specific phylogeographic patterns and Pleistocene east-west divergence in Annona (Annonaceae) trees in the Brazilian Cerrado. Botanical Journal of the Linnean Society 181, 21–36.
40. Ojeda F, Budde KB, Heuertz M, Segarra-Moragues JG, González Martínez SC (2016) Biogeography and evolution of seeder and resprouter forms of Erica coccinea (Ericaceae) in the fire-prone Cape fynbos. Plant Ecology 217, 751–761.
39. Unger GM, Heuertz M, Vendramin GG, Robledo-Arnuncio JJ. 2016. Assessing early fitness consequences of exotic gene flow in the wild: a field study with Iberian pine relicts. Evolutionary Applications 9(2), 367–80. 38. Pokorny L, Riina R, Mairal M, Culshaw V, Meseguer AS, Serrano M, Carbajal R, Ortiz S, Heuertz M, Sanmartin
I. 2015. Living on the edge: timing of Rand Flora disjunctions congruent with ongoing aridification in Africa. Frontiers in Genetics 6, 154.
37. Plomion C, Bastien C, Bogeat-Triboulot M-B, Bouffier L, Déjardin A, Duplessis S, Fady B, Heuertz M, Le Gac A-L, Le Provost G, Legué V, Lelu-Walter A-M, Leplé J-C, Maury S, Morel A, Oddou-Muratorio S, Pilate G, Sanchez L, Scotti I, Scotti-Saintagne C, Segura V, Trontin J-F, Vacher C (2016) Forest tree genomics: 10 achievements from the past 10 years and future prospects. Annals of Forest Science 73, 77–103.
36. Jaramillo-Correa JP, Grivet D, Lepoittevin C, Sebastiani F, Heuertz M, Garnier-Géré P, Alía R, Plomion C, Vendramin GG, González-Martínez SC (2015) Molecular proxies of climate maladaptation in a long-lived tree (Pinus pinaster Aiton, Pinaceae). Genetics 199(3), 793–807.
35. Lexer C, Wüest R, Mangili S, Heuertz M, Stölting KN, Pearman P, Forest F, Salamin N, Zimmermann N, Bossolini E (2014) Genomics of the speciation continuum in an African plant biodiversity hotspot I: drivers of population divergence in Restio capensis (Restionaceae). Molecular Ecology 23, 4373–4386.
34. Källman T, De Mita S, Larsson H, Gyllenstrand N, Heuertz M, Parducci L, Suyama Y, Lagercrantz U, Lascoux M (2014) Patterns of nucleotide diversity at photoperiod related genes in Norway spruce [Picea abies L. (Karst)], PLOS ONE 9, e95306.
33. Dauby G, Duminil J, Heuertz M, Koffi KG, Stévart T, Hardy OJ (2014) Congruent phylogeographic patterns of eight tree species in Atlantic Central Africa provide insights on the past dynamics of forest cover. Molecular Ecology 23, 2299–2312.
32. Budde KB, Heuertz M, Hernández-Serrano A, Pausas JG, Vendramin GG, Verdú M, González-Martínez SC (2014). In situ genetic association for fire serotiny, a fire-related trait, in Mediterranean maritime pine (Pinus pinaster Aiton). New Phytologist 201, 230–241.
31. Heuertz M, Duminil J, Dauby G, Savolainen V, Hardy OJ (2014) Comparative phylogeography in rainforest trees from Lower Guinea, Africa. PLOS ONE 9, e84307.
30. Piotti A, Leonardi S, Heuertz M, Buiteveld J, Geburek T, Gerber S, Kramer K, Vettori C, Vendramin GG (2013) Within-population genetic structure in beech (Fagus sylvatica L.) stands characterized by different disturbance histories: does forest management simplify population substructure? PLOS ONE 8, e73391. 29. Hardy OJ, Born C, Budde K, Daïnou K, Dauby G, Duminil J, Ewédjé EEBK, Gomez C, Heuertz M, Koffi GK, Lowe
AJ, Micheneau C, Ndiade-Bourobou D, Piñeiro R, Poncet V (2013) Comparative phylogeography of African rain forest trees: a review of genetic signatures of vegetation history in the Guineo-Congolian region. Comptes Rendus Geoscience 345, 284–296.
28. Budde KB, González-Martínez SC, Hardy OJ, Heuertz M (2013) The ancient tropical rainforest tree Symphonia globulifera L. f. (Clusiaceae) was not restricted to postulated Pleistocene refugia in Atlantic Equatorial Africa. Heredity11, 66–76.
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27. Macaya-Sanz D, Heuertz M, López-de-Heredia U, de-Lucas AI, Hidalgo E, Maestro C, Prada A, Alía R, González-Martínez SC. 2012. The Atlantic-Mediterranean watershed, river basins and glacial history shape the genetic structure of Iberian poplars. Molecular Ecology 21, 3593–3609.
26. Koffi KG, Heuertz M, Jans R, Hardy O, Vendramin GG, Duminil J (2012) Characterization of new microsatellite loci isolated from Santiria trimera (Burseraceae). American Journal of Botany 99, E334–E336.
25. Duminil J, Koffi GK, Debout G, Sebastiani F, Vendramin GG, Heuertz M, González-Martínez SC, Hardy OJ (2011) Isolation of SSR markers for two African tropical tree species Erythrophleum ivorense and E. suaveolens (Fabaceae, Caesalpinioideae). American Journal of Botany 98, E106–E108.
24. Koffi KG, Hardy OH, Doumenge C, Cruaud C, Heuertz M (2011) Diversity gradients and pylogeographic patterns in a widespread African tree of mature rainforests, Santiria trimera, Burseraceae. American Journal of Botany 98, 254–264.
23. Duminil J, Heuertz M, Doucet JL, Bourland N, Cruaud C, Gavory F, Doumenge C, Navascués M, Hardy OJ (2010) CpDNA-based species identification and phylogeography: application to African tropical tree species. Molecular Ecology 19, 5469–5483.
22. Daïnou K, Bizoux JP, Doucet JL, Mahy G, Hardy OJ, Heuertz M (2010) Forest refugia revisited: SSRs and cpDNA sequence support historial isolation in a wide-spread African tree with high colonization capacity, Milicia excelsa (Moraceae). Molecular Ecology 19, 4462–4477.
21. Koffi KG, Heuertz M, Doumenge C, Onana JM, Hardy OJ (2010) A combined analysis of morphological traits, chloroplast and nuclear DNA sequences within Santiria trimera (Burseraceae) suggests several species following the Biological Species Concept. Plant Ecology and Evolution 143, 160–169.
20. Santana SC, Heuertz M, Arranz C, Rubio JA, Martínez-Zapater JM, Hidalgo E (2010) Genetic structure, origins and relationships of grapevine cultivars from the Castilian Plateau (Northern-Central Spain). American Journal of Enology and Viticulture 61, 214–224.
19. Albaladejo RG, González-Martínez SC, Heuertz M, Vendramin GG, Aparicio A (2009) Spatiotemporal mating pattern variation in a wind-pollinated Mediterranean shrub. Molecular Ecology18, 5195–5206.
18. Heuertz M, Teufel J, González-Martínez SC, Soto A, Fady B, Alía R, Vendramin GG (2010) Geography determines genetic relationships between species of mountain pine (Pinus mugo complex) in western Europe. Journal of Biogeography 37, 541–556.
17. Bizoux JP, Daïnou K, Bourland N, Hardy OJ, Heuertz M, Mahy G, Doucet JL (2009) Spatial genetic structure in Milicia excelsa (Moraceae) indicates extensive gene dispersal in a low density wind pollinated tropical tree. Molecular Ecology 18, 4398–4408.
16. De-Lucas AI, González-Martínez SC, Vendramin GG, Hidalgo E, Heuertz M (2009) Spatial genetic structure in continuous and fragmented populations of Pinus pinaster Aiton. Molecular Ecology 18, 4564–4576.
15. Goryslavets S, Risovanna V, Bacilieri R, Hausman JF, Heuertz M (2010) A parentage study of closely related Ukrainian wine grape cultivars using microsatellite markers. Cytology and Genetics 44, 29–37.
14. De-Lucas AI, González-Martínez SC, Hidalgo E, Bravo F, Heuertz M (2009) Admixture, one-source colonization or long-term persistence of maritime pine in the Castilian Plateau? Insights from nuclear microsatellite markers. Investigacíon agraria: sistemas y recursos forestales 18, 3–12.
13. Dick CW, Heuertz M (2008) The complex biogeographic history of a widespread tropical tree species. Evolution 62, 2760–2774.
12. Barbará T, Lexer C, Martinelli G, Mayo S, Fay M, Heuertz M (2008) Within-population spatial genetic structure in four naturally fragmented plant species of a Neotropical ‘inselberg’ radiation, Alcantarea imperialis, A. geniculata, A. glaziouana, and A. regina (Bromeliaceae). Heredity 101, 285–296.
11. Heuertz M, Goryslavets S, Hausman JF, Risovanna V (2008) Characterization of grapevine accessions from Ukraine using microsatellite markers. American Journal of Enology and Viticulture 59, 169–178.
10. Heuertz M, De Paoli E, Källman T, Larsson H, Jurman I, Morgante M, Lascoux M, Gyllenstrand N (2006) Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway spruce (Picea abies (L.) Karst). Genetics 174, 2095–2105.
9. Frantz AC, Tigel Pourtois J, Heuertz M, Schley L, Flamand MC, Krier A, Bertouille S, Chaumont F, Burke T (2006) Genetic structure and assignment tests demonstrate illegal translocation of red deer (Cervus elaphus) into a continuous population. Molecular Ecology 15, 3191–3203.
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8. Heuertz M, Carnevale S, Fineschi S, Sebastiani F, Hausman JF, Paule L, Vendramin GG (2006) Chloroplast DNA phylogeography of European ashes, Fraxinus sp. (Oleaceae): roles of hybridisation and life history traits. Molecular Ecology 15, 2131–2140.
7. Heuertz M, Fineschi S, Anzidei M, Pastorelli R, Salvini D, Paule L, Frascaria-Lacoste N, Hardy OJ, Vekemans X, Vendramin GG (2004) Chloroplast DNA variation and postglacial recolonisation of common ash (Fraxinus excelsior L.) in Europe. Molecular Ecology 13, 3437–3452.
6. Djè Y, Heuertz M, Ater M, Lefèbvre C, Vekemans X (2004) In situ estimation of outcrossing rate in sorghum landraces using microsatellite markers. Euphytica 138, 205–212.
5. Heuertz M, Hausman JF, Hardy OJ, Vendramin GG, Frascaria-Lacoste N, Vekemans X (2004) Nuclear microsatellites reveal contrasting patterns of genetic structure between western and southeastern European populations of the common ash (Fraxinus excelsior L.). Evolution 58, 976–988.
4. Heuertz M, Vekemans X, Hausman JF, Palada M, Hardy OJ (2003) Estimating seed versus pollen dispersal from spatial genetic structure in the common ash. Molecular Ecology 12, 2483–2495.
3. Hardy OJ, Charbonnel N, Freville H, Heuertz M (2003) Microsatellite Allele Sizes: A simple test to assess their significance. Genetics 163, 1467–1482.
2. Heuertz M, Hausman JF, Tsvetkov I, Frascaria-Lacoste N, Vekemans X (2001) Assessment of genetic structure within and among Bulgarian populations of the common ash (Fraxinus excelsior L.). Molecular Ecology 10, 1615–1624.
1. Djè Y, Heuertz M, Lefèbvre C, Vekemans X (2000) Assessment of genetic diversity within and among germplasm accessions in cultivated sorghum using microsatellite markers. Theoretical and Applied Genetics 100, 918–925.
Other peer reviewed publications
3. Dauby G., Duminil J, Heuertz M, Hardy OJ (2010) Chloroplast DNA polymorphism and phylogeography of a Central African tree species widespread in mature rainforests: Greenwayodendron suaveolens (Annonaceae). Tropical Plant Biology 3, 4–13.
2. Wahid N, González-Martínez SC, Alía R, Boulli A, Heuertz M (2009) Exploration et conservation des ressources génétiques du pin maritime au Maroc. Forêt Méditerranéenne 30, 240–256.
1. Djè Y, Heuertz M, Ater M, Lefèbvre C, Vekemans X (2007) Évaluation de la diversité morphologique des variétés traditionnelles de sorgho du Nord-ouest du Maroc. Biotechnol. Agron. Soc. Environ. 11, 39–46.
Book chapters
5. Pliûra A, Heuertz M (2012) EUFORGEN Guía técnica para la conservación genética y utilización del fresno común (Fraxinus excelsior L.). Foresta Madrid. España. 6 p., ISSN 1575-2356.
4. González Martínez SC, Dillon S, Garnier-Géré P, Krutovsky KV, Alía R, Burgarella C, Eckert AJ, García-Gil MR, Grivet D, Heuertz M, Jaramillo-Correa JP, Lascoux M, Neale DB, Savolainen O, Tsumura Y, Vendramin GG, (2011) Patterns of nucleotide diversity and association mapping. In,Genetics, Genomics and Breeding of Conifers. Plomion C, Bousquet J, Kole C (eds.). Science Publishers, New Hampshire.pp.239–275.
3. Heuertz M, Hausman JF, Vekemans X (2006) Genetic structure of common ash in Europe analysed with nuclear microsatellites. In: EUFORGEN Noble Hardwoods Network, Report of the sixth (9–11 June 2002, Alter do Chão, Portugal) and seventh meetings (22 - 24 April 2004, Arezzo - Italy), compiled by Bozzano M., M. Rusanen, P. Rotach, J. Koskela. International Plant Genetic Resources Institute, Rome, Italy, pp. 27–28. ISBN 92-9043-682-4
2. Pliûra A, Heuertz M (2003) EUFORGEN Technical Guidelines for genetic conservation and use for common ash (Fraxinus excelsior). International Plant Genetic Resources Institute, Rome, Italy. 6 pages. ISBN 92-9043-567-4.
1. Heuertz M (2002) Introductory country report. In: EUFORGEN Noble Hardwoods Network, Report of the fourth meeting, 4–6 September 1999, Gmunden, Austria, and the fifth meeting, 17–19 May 2001, Blessington, Ireland, compiled by J.Turok, G. Eriksson, K. Russel and S. Borelli. International Plant Genetic Resources Institute, Rome, Italy, pp. 19-20 ISBN 92-9043-496-1
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Conference contributions and seminars Conference contributions and seminars Conference contributions and seminars Conference contributions and seminars
Participation in conferences
Heuertz M, Jehanne Q, Budde KB, Caron H, Tysklind N, Scotti-Saintagne C, Guichoux E, Molino JF, Sabatier D, El Mujtar V, Franc A, Garnier-Géré P, Mariette S. Poster. Evolutionary history of tropical tree species complexes: species delimitation and adaptive genetic variation in the Brazil nut clade (Lecythidaceae). Evolution, II Joint Congress on Evolutionary Biology – Montpellier, August 2018.
Schmitt S, Heuertz M. Tysklind N, Hérault B. Ecological genomics of niche exploitation and individual performance in tropical forest trees. Poster. European Conference of Tropical Ecology, GTOE18, Paris 26-29 March 2018.
Budde KB, Olsson S, Torroba-Balmori P, González-Martínez SC, Loureiro J, Rakotonandrasana S, Rakotondrafara A, Sanmartín I, Heuertz M. Talk. Macro- and microevolutionary processes in the genus Symphonia (Clusiaceae) in Madagascar: species delimitation, hybridization and species habitat associations. European Conference of Tropical Ecology, GTOE18, Paris 26-29 March 2018.
Heuertz M, Jehanne Q, Budde KB, Caron H, Tysklind N, Scotti-Saintagne C, Guichoux E, Molino JF, Sabatier D, El Mujtar V, Franc A, Garnier-Géré P, Mariette S. Talk. Evolutionary history of tropical tree species complexes: species delimitation and adaptive genetic variation in the Brazil nut clade (Lecythidaceae). European Conference of Tropical Ecology, GTOE18, Paris 26-29 March 2018.
Heuertz M, Olsson S, Budde KB, Torroba-Balmori P, González-Martínez SC, Rakotonandrasana, SR, Rakotondrafara A, Sanmartín I. Species delimitation, hybridization and patterns of adaptive genetic variation in the tropical tree genus Symphonia (Clusiaceae) in Madagascar. Talk. XXIth AETFAT Congress, Nairobi, May 15-19, 2017.
Palma-Silva C, Leal BSS, Araujo VR, Chaves CJN, Huacre LAP, Heuertz M. Phylogeography, population genomics and adaptive variation on species complex Pitcairnia lanuginosa (Bromeliaceae). Poster. Evolution 2017, Portland, Oregon, USA, May 2017.
Heuertz M, Jehanne Q, Budde KB, Caron H, El Mujtar V, Franc A, Garnier-Géré P, Guichoux E, Scotti-Saintagne C, Molino JF, Sabatier D, Mariette S. Hybridization and patterns of adaptive genetic variation in tropical trees of the Bertholletia clade (Lecythidaceae) in French Guiana. Talk. Meeting of the German Society for Tropical Ecology, GTOE17, Brussels, February 6-10, 2017.
Olsson A, Budde K, Torroba-Balmori MP, Rakotonandrasana S, Rakotondrafara A, Sanmartin S, Heuertz M. Poster. Hybridization and species delimitation of Symphonia (Clusiaceaea) in Madagascar. Poster. Meeting of the German Society for Tropical Ecology, GTOE17, Brussels, February 6-10, 2017.
Heuertz M, Olsson S, Torroba-Balmori P, Budde K, Rakotonandrasana S, Rakotondrafara A, Caron H, Scotti-Saintagne C, Mariette S, Franc A, Jehanne Q, Sanmartín I.Hybridization and the evolution of tropical tree species complexes. Talk. Annual Meeting of the Excellence Laboratory “Centre for the study of biodiversity in Amazonia”, Cayenne, French Guiana, Oct 2016.
Heuertz M, Olsson S, Torroba-Balmori P, Rakotonandrasana S, Rakotondrafara A, Béatrix M, Caron H, Scotti-Saintagne C, Mariette S, Franc A, Jehanne Q, Sanmartín I. 2016. Talk. Hybridization and the evolution of tropical tree species. ATBC Annual Meeting, Montpellier, June 2016.
Torroba-Balmoria P, Parchman TL, Budde KB, Heer K, Santiago C. González-Martínez SC, Scotti-Saintagne C, Dick CW, Heuertz M. 2016. Talk. Demography at different scales in the wide-spread tropical species Symphonia globulifera (Clusiaceae). IUFRO Genomics and Forest Tree Genetics Conference, Arcachon, France, May 2016. Lexer C, Bossolini E, Caseys C, Heuertz M, Kessler M, Lindtke D, Paris M, Pearman PP, Salamin N, Stölting KN,
Wüest RO, Zimmermann NE. 2015. Talk. Speciation Genomics in Plants: Divergence Continuum and Beyond. International Plant and Animal Genome Conference XXIII 2015.
Olsson S, Bautista R, Claros MG, Scotti-Saintagne C, Scotti I, Rakotonandrasana RS, Rakotondrafara A, Gonzáelz-Martínez SC, Heuertz M. Talk. Studying the evolution of tropical tree taxa: opportunities and limitations of genomic approaches. Joint meeting between the British Ecological Society and the Société Française d’Ecologie, Lille, December 9-12, 2014.
Heuertz M. 2014. Phylogeography of tropical trees. Talk. Annual Meeting of the Excellence Laboratory “Centre for the study of biodiversity in Amazonia”, Toulouse, Oct 2014.
Ley A, Heuertz M, Hardy OJ. 2014. The evolutionary history of central African rain forest plants: phylogeographic insights from sister species of the liana Haumania (Marantaceae). Talk. iSEQ - Methods and applications of
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Next Generation Sequencing in evolutionary research, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany, November 13-14, 2014.
González-Martínez SC, Grivet D, Ruiz-Daniels R, Jaramillo-Correa JP, Lorenzo Z, Budde K, Rodríguez-Quilón I, Heuertz M, Alía R, Vendramin GG. 2014. Talk. Molecular signatures of climate adaptation and range expansions in Mediterranean conifers. IUFRO Forest Tree Breeding Conference, August 25-29, Prague, Czech Republic.
Heuertz M,Budde KB, Heer K, Torroba-Balmori MP, Dick CW, Hardy OJ, Scotti I. 2014.Evolutionary history in the genus Symphonia. Talk. XXth AETFAT Congress Stellenbosch, South African Republic. Scripta Botanica Belgica 52, 187.
Lexer C, Heuertz M, Mangili S, Bossolini E, Wüest R. ´Next generation´ biogeography: towards understanding the drivers of diversification in radiations of African plants. Talk. XXth AETFAT Congress Stellenbosch, South African Republic. Scripta Botanica Belgica 52.
Berthouzoz M, Heuertz M, Lexer C. 2014. Microevolutionary drivers of species diversification and persistence in Cape Proteas. Talk. XXth AETFAT Congress Stellenbosch, South African Republic. Scripta Botanica Belgica 52. Dauby G, Duminil J, Heuertz M, Koffi G, Stévart T, Hardy OJ. 2014.Congruent phylogeographic patterns of eight tree species in Atlantic Central Africa provide insights on the past dynamics of forest cover. Talk. XXth AETFAT Congress Stellenbosch, South African Republic. Scripta Botanica Belgica 52.
Correa Ribeiro P, Carvalho Areal Miller L, Pires de Lemos-Filho J, Lovato MB, Heuertz M. 2013. Comparative phylogeography of Annona (Annonaceae) species from the Brazilian Cerrado (savannah). Poster. Workshop: Conservation biology in the 21st century. Fribourg, Switzerland, September 5-6, 2013.
Heuertz M,Budde KB, Heer K, Bautista R, Dick CW, González-Martínez SC, Hardy OJ. 2012. Phylogeography and the geographic scale of adaptation in a widespread rainforest tree, Symphonia globulifera (Clusiaceae). 1st Annual meeting of Plant Ecology and Evolution. Talk. Meise, Belgium, November 2012.
Budde KB, Heuertz M, González-Martínez SC. 2012. Demographic and selective effects of fire in Mediterranean pines: Molecular Variation and Pyrophytism. First Joint Congress on Evolution. Talk. Convention Centre Ottawa, Canada, July 6-10.
Heuertz M, Kovacik I, González-Martínez SC, Alía R. 2012. Genetic structure of mountain pines (Pinus mugo complex) and risk of genetic introgression from Scots pine in southern marginal populations. Talk. 1st AFORGEN (Alpine Forest Genetics group) workshop, Rifugio Collini, Adamello Brenta National Park, June 25-26. Italy.
Heuertz M, Budde KB, Heer K, Hardy OJ. Evolutionary history of Symphonia globulifera (Clusiaceae). Poster. Symposium: The impact of a major environmental crisis on species, populations and communities: the fragmentation of African forests at the end of the Holocene”. Académie des Sciences – Paris, Fondation Simone et Cino del Duca, Paris, March 2012.
Hardy OJ, Budde KB, Daïnou K, Dauby G, DeboutvG, Duminil J, Ewedje EE, Heuertz M, Koffi GK, Ley A. 2012. Talk. Phylogeography of guineo-congolian forest plants: a first synthesis. Symposium: The impact of a major environmental crisis on species, populations and communities: the fragmentation of African forests at the end of the Holocene”. Académie des Sciences – Paris, Fondation Simone et Cino del Duca, Paris, March 2012. González-Martínez SC, Heuertz M, Grivet D, Voltas J, Jaramillo-Correa JP, Climent J, Vendramin GG, Alía R. 2012. Testing geographical genetic clines and environmental associations in Mediterranean pines. Talk. Adaptive Landscape Genomics meeting, Neuchâtel, Switzerland, February 2012.
Heuertz M, Budde KB, Hardy OJ, Dick CW. 2011. Transatlantic species cohesion since the mid-Miocene in the ancient tropical tree Symphonia globulifera (Clusiaceae). Talk. Evolution 2011, University of Oklahoma, OK, USA, July 2011.
Heuertz M, Forrest A, Cano E, Vargas P. 2011. Microevolution in critically-endangered plants: high genetic diversity in the narrow endemic Antirrhinum charidemi. Talk. ECOFLOR meeting, Toledo, Spain, 2-4 February. Koffi G, Heuertz M, Hardy O. Intraspecfic diversity of cpDNA sequences of an African tropical forest tree: Santiria trimera (Burseraceae). Poster presented at the IXth AETFAT Congress, Antananarivo, Madagascar, 2010. Scripta Botanica Belgica 46: 245.
Duminil J, Heuertz M, Hardy OJ. Species delimitation and phylogeography of a complex of African tropical tree species. Talk presented at the IXth AETFAT Congress, Antananarivo, Madagascar, 2010. Scripta Botanica Belgica 46: 157.
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Heuertz M, Savolainen V, Budde K, Daïnou K, Duminil J, Koffi GK and Hardy OJ. Can Pleistocene refuge theory explain within-species patterns of genetic diversity in African lowland rainforest trees? Talk presented at the IXth AETFAT Congress, Antananarivo, Madagascar, 2010. Scripta Botanica Belgica 46: 212.
Albaladejo RG, González-Martínez SC, Heuertz M, Vendramin GG, Aparicio A. Spatiotemporal mating pattern variationin the wind-pollinated Mediterranean shrub Pistacia lentiscus L. Poster presented at the IX Congreso de la Asociación Española de Ecología Terrestre en Úbeda (Jaén), Spain, 2009.
Heuertz M, Savolainen V, Budde K, Daïnou K, Duminil J, Koffi GK and Hardy OJ. Can Pleistocene refuge theory explain within-species patterns of genetic diversity in African lowland rainforest trees? Talk presented at the ATBC-GTÖ Conference, Marburg, Germany, 2009.
Budde K, González-Martínez SC, Dick CW, Hardy OJ, Heuertz M. Genetic structure of Symphonia globulifera at different geographical scales. Poster presented at the ATBC-GTÖ Conference, Marburg, Germany, 2009. Duminil J, Heuertz M, Hardy OJ. Species delimitation and phylogeography of a complex of African tropical tree
species. Poster presented at the ATBC-GTÖ Conference, Marburg, Germany, 2009.
Parmentier I, Dauby G, Debout G, Duminil J, Ewedje E, Heuertz M, Koffi G, Lachenaud O & Hardy OJ. Talk at the Syposium of African Botany in Brussels: Phytogeography and spatial organisation of diversity in tropical Africa: uncertainties, progress and perspectives. 2009.
De-Lucas AI, González-Martínez SC, Hidalgo E, Bravo F, Heuertz M. Origen del pino negral en la Meseta Castellana: ¿Mezcla de los gene pools atlántico y mediterráneo o resultado de una rápida colonización a partir del este Peninsular? Talk presented at the V Congreso Forestal Español, Avila, Spain, 2009
Heuertz M, Koffi G, Savolainen V, Hardy O. Nucleotide diversity and demographic history of African lowland rainforest tree species. Talk presented at Conférence Jacques Monod, Génomique Evolutive. Roscoff, France, 2007.
Heuertz M, Koffi G, Savolainen V, Hardy O. Phylogeography of African lowland rainforest trees. Talk presented at XVIII AETFAT Congress (Assosciation pour l’Etude de la Flore d’Afrique Tropicale), Yaoundé, Cameroon, 2007.
Heuertz M, Koffi G, Savolainen V, Hardy O. Phylogeography of African lowland rainforest trees. Talk, presented at Young Botanists’ Day, KUL Leuven, 2006. Astracts of the Young Botanists Day 2006: "Tropical Botany in the Benelux", Belgian Journal of Botany 140:249-261
Koffi G, Heuertz M, Hardy O. Intraspecfic diversity of cpDNA sequences of an African tropical forest tree: Santiria trimera (Burseraceae). Poster presented at Young Botanists’ Day, KUL Leuven, 2006. Abstracts of the Young Botanists Day 2006: "Tropical Botany in the Benelux", Belgian Journal of Botany 140:249-261
Heuertz M, Koffi Kouamé G, Savolainen V, Hardy OJ, 2006. Phylogeography of African lowland rainforest trees: Preliminary results. Talk presented at the IUFRO/COST Conference : Population Genetics and Genomics of Forest Trees: From Gene Function to Evolutionary Dynamics and Conservation. Alcalá de Henares, Madrid, Spain. 01.-06.10.2006
Heuertz M, Källman T, Gyllenstrand N, Lagercrantz U, Lascoux M, 2005. Genetic variation in phenology candidate genes from Norway spruce (Picea abies (L.) Karst) populations featuring contrasting histories. Poster presented at the ConGen Workshop: Refining the conservation genetics paradigm: genetic sources of extinction, environmental stress, and the maintenance of adaptive diversity, Santiago de Compostela, Spain. Heuertz, M, S. Gorislavets, V. Risovanaya, L. Hoffmann, J.F. Hausman, 2005. Characterisation of grapevine
genetic resources in the Black Sea and Caucasus regions. Poster presented at the Xth Congress of the European Society for Evolutionary Biology, Jagellonian University, Krakow, Poland, 15-20.08.2005.
Heuertz, M., T. Källman, N. Gyllenstrand, U. Lagercrantz, and M. Lascoux, 2004. Poster: SNP variation in candidate genes for climatic adaptation in Norway spruce (Picea abies L.). IUFRO Symposium on Population, Evolutionary and Ecological Genomics of Forest Trees, Asilomar Conference Grounds, Pacific Grove, California, USA.
Heuertz, M., O. J. Hardy, J.-F. Hausman, M. Palada, and X.Vekemans, 2002. Talk: Estimating pollen versus seed dispersal from spatial genetic structure in the common ash. International Conference DYGEN: Dynamics and conservation of genetic diversity in forest ecosystems, Strasbourg, France.
Heuertz, M., G.G. Vendramin, S. Carnevale, O.J. Hardy, J.-F. Hausman and X, Vekemans, 2002. Talk: Nuclear markers refine diversity patterns derived from chloroplast DNA: case study of common ash (Fraxinus excelsior L.) in Europe. IUFRO Symposium on Population and evolutionary genetics of forest trees. Stara Lesna, Slovakia.
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Heuertz, M., G.G. Vendramin, J.-F. Hausman, and X. Vekemans, 2002. Talk: Understanding genetic structure among European populations of common ash (Fraxinus excelsior L.) International Symposium on Phylogeography, Vairão, Portugal.
Heuertz, M., J.-F. Hausman and X. Vekemans, 2001. Poster: Within-population genetic structure in Fraxinus excelsior assessed from microsatellite data. VIII Congress of the European Society for Evolutionary Biology, Aarhus, Denmark.
Heuertz, M., J.-F. Hausman and X.Vekemans, 2001. Talk: Assessment of genetic structure within and among southeast European populations of the common ash (Fraxinus excelsior L.). 7th Meeting of PhD Students in Evolutionary Biology, Bernried, Germany.
Heuertz, M., J.-F. Hausman and X.Vekemans, 2000. Poster: Etude de la structure génétique à l’intérieur et entre populations de frêne commun (Fraxinus excelsior L.) en Bulgarie. XXIst meeting of the Groupe de Biologie et Génétique des Populations, Dijon, France.
Heuertz, M., J.-F. Hausman and X.Vekemans, 2000. Talk: Microsatellite variation and assessment of genetic structure in the common ash (Fraxinus excelsior L.) in Bulgaria. 6th Meeting of PhD Students in Evolutionary Biology, Vaalbeek, Belgium.
Invited talks
Hybridization and the evolution of tropical tree species. Invited talk. IUFRO Genomics and Forest Tree Genetics Conference, Arcachon, France, May 2016.
Phylogeography and the evolution of tropical tree species complexes. Invited Conference Talk. 5th Porto Alegre Evolutionary Biology Workshop (PABEW), October 2015.
Ancient invasion without speciation: neutral and adaptive processes in a widespread rainforest tree, Symphonia globulifera (Clusiaceae). Invited talk. Congress Asociación Española de Ecología Terrestre, Pamplona, May 2013.
Genetic structure in plant species: from meters to continents. Keynote talk. Biology 2012: Joint meeting of the Swiss Zoological Society, Swiss Botanical Society, Swiss Systematic Society. Fribourg, February 2012. Can Pleistocene refuge theory explain within-species patterns of genetic diversity in African lowland rainforest
trees? Invited talk. Fronteras en Ecología & Evolución, Biodiversidad 2010, Seminarios del Instituto de Ecología, Universidad Autónoma de Mexico, September 2010.
Heuertz M, González-Martínez SC, Koffi KG, Hardy O. Demographic history of African lowland rainforest fruit trees and conservation issues. Keynote talk. Second Workshop of SAFORGEN (Working Group on Sub-Saharian African Food Tree Species Forest Genetic Resources Network), organized by SAFORGEN (Bioversity International) in collaboration with INIA-CIFOR, Spain. Cotonou, Benin, December 2007.
Heuertz M, Savolainen V, Budde K, Daïnou K, Duminil J, Koffi GK and Hardy OJ. Can Pleistocene refuge theory explain within-species patterns of genetic diversity in African lowland rainforest trees? Invited talk. II Jornadas de Conservación de la Diversidad Biológica. La Coruña, Spain, 2009.
Other talks and seminars
Analysing resequencing data for species delimitation in the Lecythidaceae. Tropical tree biodiversity, Ecology and Evolution. Talk. Workshop organized by ULB, Anseremme, Belgium, Nov. 11-13, 2018.
Heuertz M, Jehanne Q, Budde KB, Caron H, Scotti-Saintagne C, Franc A, Mariette S. Species delimitation and introgression in tropical trees: Lecythidaceae in French Guiana. INPA, Manaus, Brazil, July 2017.
Heuertz M, Jehanne Q, Budde KB, Caron H, Scotti-Saintagne C, Franc A, Mariette S. Species delimitation and introgression in tropical trees: Lecythidaceae in French Guiana. Meeting of the INRA EFPA department Genetics group. Orleans. June 22, 2017.
Evolution of tropical tree species complexes. Seminar at the Department of Evolutionary and Systematic Botany. University of Vienna, March 27, 2017.
RAD-Seq in related taxa: marker development vs. direct use for evolutionary studies. Animation of Biogeco Axis 4 on Mathematics and bioinformatics. March 2017.
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Evolutionary history of Symphonia (Clusiaceae). Centre national d’application des recherches pharmaceutiques, Antananarivo, Madagascar, October 2014.
Spatially explicit mechanisms of recent evolution in an African biodiversity hotspot. WSL Birmensdorf, Switzerland, December 2013.
Genomics of the speciation continuum: Spatially explicit mechanisms of recent evolution in an African biodiversity hotspot. University of Fribourg, Switzerland. November 2013.
REVOL: Recent evolution in an African biodiversity hotspot. ETH Zürich, Switzerland. November 2013.
Phylogeography and the geographic scale of adaptation in tropical trees of the genus Symphonia (Clusiaceae). V Maratón científico, Real Jardín Botánico, Madrid. October 2012.
Population “genomics” of Symphonia globulifera. Summer School in Population Genomics and Bioinformatics, Swiss Institute of Bioinformatics, Adelboden June 17-22, 2012.
Demographic history of the ancient tropical tree Symphonia globulifera L.f. (Clusiaceae). 2º Maratón científico INIA-CIFOR, Madrid. July 2012.
Inferring the demographic history of African tree species using population genetics approaches. Seminar, INIA, April 2012.
Evolution of Biodiversity in hotspots. 1er Maratón científico INIA-CIFOR, Madrid. July 2011.
The role of fragmentation in the evolution of biodiversity in hotspots. Seminar, University of Alcalá de Henares, June 2011.
Microevolution in critically-endangered plants: high genetic diversity in the narrow endemic Antirrhinum charidemi. Seminar at INIA-CIFOR, March 2011.
Phylogeography of African Rainforest trees. Seminar. Universidad Rey Juan Carlos I. Móstoles, Madrid, Spain, 2008.
Phylogeography of African rainforest trees and perspectives for studying biodiversity evolution in hotspots. Serie de seminarions del INIA-CIFOR, Madrid, Spain, 2008.
Structure génétique et phylogéographie de ligneux des forêts de basse altitude du Bas-Guinéen. Seminar at the Laboratoire de Lutte Biologique et Ecologie Spatiale (LUBIES) and Laboratoire d'Eco-Ethologie Evolutive (EEE), Université Libre de Bruxelles, Belgium, 2007.
Patrons de polymorphisme nucléotidique chez l'épicéa: histoire démographique ou signes de sélection? Semniar at the Laboratoire de Lutte Biologique et Ecologie Spatiale (LUBIES) and Laboratoire d'Eco-Ethologie Evolutive (EEE), Université Libre de Bruxelles, Belgium, 2006.
Phylogeography of African lowland rainforest trees. Centre International de Recherches Médicales de Franceville, Franceville, Gabon. 05.09.2006.
Phylogeography of African lowland rainforest trees. Institut de Recherche en Ecologie Tropicale, Libreville, Gabon. 22.08.2006.
Investigating the phylogeography of African lowland rainforest trees. Jodrell Laboratory, Royal Botanic Gardens, Kew, London, United Kingdom, March 2006.
Phylogeography and genetic structure of forest trees. XIII Ciclo de seminarios sobre Ecología y Evolución de las Plantas (host: Dr. Pedro Jordano), Universidad de Sevilla, Spain, October 2006.
Estimating seed versus pollen dispersal from spatial genetic structure in the common ash. Jodrell Laboratory, Royal Botanic Gardens (host: Dr. Christian Lexer), Kew, London, United Kingdom, February 2006.
Structure génétique de populations d'arbres forestiers en Europe. Société des Naturalistes Luxembourgeois, Musée National d’Histoire Naturelle, Luxembourg, 2005.
Diversité génétique de gènes candidats pour l’adaptation à la phénologie chez l’épicéa. Laboratoire de Génétique et Evolution des Populations, Université de Lille 1 (host : Prof. Xavier Vekemans), France, 2005. Estimation of population genetics parameters. EU Project FRAXIGEN, University of Göteborg, Sweden, 2004. Phylogeography of Fraxinus excelsior. Invited talk (host: Dr. Janet Stewart). Oxford University, United Kingdom,
June 2002.
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Postgraduate courses followed Postgraduate courses followed Postgraduate courses followed Postgraduate courses followed
Encadrement des doctorants, Université de Bordeaux, January 2018.
Préparer un projet européen H2020: Montage et gestion en réponse aux appels à propositions 2018 & 2019. INRA. Paris, 6 – 7 December 2017.
Egglib – population genetics analysis using Python, INRA Réseach de Génétique, Orléans, June 2017. Production et analyse de données NGS – Exomes et panels de gènes. Univ. Bordeaux. 20 September 2016. NGS genome & transcriptome assembly and analysis, CUSO-STAROMICS, Fribourg, June 16-18, 2014.
High-performance computing in the life sciences, Swiss Institute for Bioinformatics, Fribourg, September, 2013. Conservation Biology in the 21th century, Fribourg, September 2013 (1 ECTS).
Summer School in Population Genomics and Bioinformatics, Swiss Institute of Bioinformatics, Adelboden June 17-22, 2012.
ANDNMO12 course "Analysis of NGS Data from Non-Model Organisms", Instituto Gulbenkian de Ciência, Oeiras, Lisbon, June 4-6, 2012.
Molecular evolution: genetic drift or genetic draft. 2007. Uppsala University, Drs K Thornton, M Schierup y M Lascoux. 3 ECTS.
A historical introduction to fundamental concepts in ecology. 2006. Université Libre de Bruxelles. Belgium. Drs J Chave and O Hardy. 2 ECTS.
Analysis of sequence data II (Advanced). 2005. Uppsala University. Drs. G McVean y M Lascoux. Sweden. 3 ECTS. Analysis of sequence data I (Advanced). 2004. Uppsala University, Sweden. Drs P Joyce y Dr. M Lascoux. 3 ECTS. Advanced Training in Forest Genetic Resource Management. 2000. University of British Columbia, Canada. Drs G
Namkoong and M Koshy, 15 ECTS.
Teaching Teaching Teaching
Teaching and mentoringand mentoringand mentoringand mentoring
Teaching
01.10.00 – 30.09.02 Associate Professor for Botany Practicals (“Certificat d’Etudes Scientifiques” equivalent to 1st year Bachelor’s degree in Life Sciences). Centre Universitaire de Luxembourg, Luxemburg (2 ECTS).
01.10.01 – 31.01.02 Associate Professor for Plant Physiolgy. (“Certificat d’Etudes Scientifiques” equivalent to 2nd year Bachelor’s degree, Centre Universitaire de Luxembourg, Luxemburg (1 ECTS).
2001 – 2002 Co-supervision of practicals in Population Genetics. Université Libre de Bruxelles, Belgium (1 ECTS).
2004 Co-supervision of practicals in Population Genetics. Uppsala University, Uppsala, Sweden. 2005 – 2007 Teaching assistant for Population Genetics. Université Libre de Bruxelles, Belgium.
March 2008 Lecture in “Demographic history of African lowland rainforest trees and conservation issues”. Seminario en el programa de doctorado con Mención de Calidad “Conservación y uso sostenible de los sistemas forestales”, Universidad de Valladolid.
March 2009 Teacher in the “Curso de conservación de recursos genéticos forestales, Centro de Formación de la Cooperación Española” in Cartagena de Indias, Colombia.
July 2009 Teaching assistant in the Evoltree Network of Excellence course “DNA Sequence analysis and association genetics”, CENEAM, Segovia.
November 2010 Teacher in the V Curso Internacional sobre Conservación y Utilización de Recursos Genéticos Forestales, INIA, Madrid.
June 2013 Teacher in the EvolTree EU Network of Excellence course: “Next-generation sequencing for beginners: applications to population genetics, forest health and tree breeding”. Valladolid, June 17-19, 2013.
December 2013 Teacher in the “Advanced topics in ecology and evolution” course, MSc level. Université de Fribourg, Switzerland.
21 Bachelor students supervision
Daniel Ducry, co-supervision with Christian Lexer, Université de Fribourg, Switzerland, 2014. Phylogeography of two Protea species from the Cape Floristic Region of South Africa.
Master students supervision
Thomas Folituu, co-supervision with Olivier Lepais. Univ. Bordeaux. 2019 (ongoing). Development of molecular markers using high-throughput sequencing in Eschweilera (Parvifolia clade, Lecythidaceae).
Janan Gawra, co-supervision with Katharina Budde, Olivier Hardy, ERASMUS MUNDUS TROPIMUNDO, Université Libre de Bruxelles, 2018. An update to the pylogeography of Symphonia globulifera in Africa.
Sana Miloudi, co-supervision with Katharina Budde, Université de Bordeaux, 2018. Phylogeography of the hyperdominant Eschweilera coriacea. Sana failed her MSc year.
Quentin Jehanne, co-supervision with Stéphanie Mariette, Université de Bordeaux, 2016. Exploration de méthodes pour la détection de SNPs sur données de RAD-Seq et confirmation expérimentale de polymorphismes.
Marjorie Berthouzoz, co-supervision with Christian Lexer, Université de Fribourg, Switzerland, 2015. Microevolutionary drivers of species diversification and persistence in Cape Proteas.
Katharina B. Budde, co-supervision with Santiago C. González-Martínez, Universidad Complutense de Madrid, 2010. Spatial genetic structure in tropical and temperate forest trees.
Miguel Rodríguez Blanco, Universidad de Valladolid, 2009. Filogeografía y estructura morfológica de dos árboles tropicales cercanos filogenéticamente: Tricoscypha acuminata y T. oddonnii (Anacardiaceae) en la región fitogeográfica de Baja Guinea, África Central.
Guillaume Kouamé Koffi, Université Libre de Bruxelles, 2007. Co-supervision with Olivier Hardy. Phylogeographie d’un arbre tropical en Afrique, Santiria trimera, Burseraceae.
PhD students supervision
Sylvain Schmitt, co-supervision with Bruno Hérault, CIRAD. Univ. Bordeaux, 2017-ongoing. Ecological genomics of niche exploitation and individual performance in tropical forest trees.
Paloma Torroba Balmori, co-supervision with Ricardo Alía, INIA-CIFOR Madrid and Universidad de Valladolid, 2013-ongoing. Adaptive evolution in the tropical tree genus Symphonia (Clusiaceae). Paloma is a forest engineer for the Spanish state administration.
Katharina B. Budde, co-supervision with Santiago C. González-Martínez, INIA-CIFOR Madrid and Universidad Complutense de Madrid, 2009-2014. Genetic structure of forest trees in biodiversity hotspots at different spatial scales. Katharina Budde was a postdoc at the University of Copenhagen (DK) in 2014-2016, an IdEx postdoc at University of Bordeaux (September 2016 – Auguest 2018) and is currently a postdoc at INRA, UMR Biogeco.
Guillaume Kouamé Koffi, co-supervision with Olivier J. Hardy, Université Libre de Bruxelles, 2006-2010. Title: Genetic structure and ecology of a tropical tree with large morphological variation and a large distribution in Central Africa, Santiria trimera, Burseraceae. Guillaume Koffi is a lecturer at the University of Abijan, Côte d’Ivoire.
Contribution to the supervision of PhD students
Abdeljalil Aissi, Université Batna 1 Hadj Lakhdar, Batna, Algeria. 2015 – (ongoing). Main supervisor: Yassine Beghami. Le chêne zéen à petites feuilles (Quercus faginea Lamk.) dans l'Aurès: cartographie, écologie et taxinomie.
André Carneiro Muniz, Univ. Minas Gerais, Brazil. Main supervisor: Maria Bernadete Lovato. Population genetics and species boundaries of Dimorphandra species (Leguminosae) from the Cerrado and Atlantic Forest: implications for conservation.
Alejandra L. Goncalves, Facultad de Ciencias Naturales y Museo - Universidad Nacional de La Plata, La Plata, Buenos Aires, Argentina, 2014-2019. Main supervisors: María Victoria García and Rolando Rivera
