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Contents

Compressing Big Data: when the rate of convergence to the entropy matters

Filippo Mignosi 7

Optimal Computation of all Repetitions in a Weighted String

Carl Barton and Solon Pissis 9

On-line String Matching in Highly Similar DNA Sequences

Nadia Ben Nsira, Thierry Lecroq and Mourad Elloumi 16 A Text Transformation Scheme for Degenerate Strings

Jacqueline Daykin and Bruce Watson 23

Block Graphs in Practice

Travis Gagie, Christopher Hoobin and Simon Puglisi 30 Compressed Spaced Suffix Arrays

Travis Gagie, Giovanni Manzini and Daniel Valenzuela 37 On Representations of Ternary Order Relations in Numeric Strings

Jinil Kim, Amihood Amir, Joong Chae Na, Kunsoo Park and Jeong Seop Sim 46 Engineering a Lightweight External Memory Suffix Array Construction Algo-

rithm

Juha K¨arkk¨ainen and Dominik Kempa 53

Faster Average Case Low Memory Semi-External Construction of the Burrows- Wheeler Transform

German Tischler 61

ASSP; the Antibody Secondary Structure Profile search tool

Dimitrios Vlachakis, Alexandros Armaos, Ioannis Kasampalidis, Arianna Filntisi

and Sophia Kossida 69

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