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(1)

A Hitchhicker’s Guide to

25

bioinformaticians

500+ tropical and

mediterranean

plant experts

(2)

Our mission

2010 : First Galaxy instance

2010 : First Galaxy instance

2010 : Agile development training

> Galaxython

Pair programming for Galaxy development

2010 : Galaxy as a training platform

SNPs detection, genomic and transcriptomic annotation, phylogeny, protein structure...

For the North… 2011 to 2017 in Montpellier

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For the North… 2011 to 2017 in Montpellier

For the South… Senegal 2012 to 2014 Vietnam 2011 to 2015 Benin 2014 to 2016 Burkina Faso 2016

2012 : IFB

Federation of the French community around Galaxy

Galaxy Days 2013 to 2016 Galaxy4Bioinformatics 2014 to 2016 Hackathons

2012 : IFB

1104 cores 4 Gb RAM / core 1 compute node with 32 cores 3 Tb RAM / core /Work 320 Tb scratch storage For temporary use /Home /Projects 830 Tb storage

Databases Web servers Login node

2015 : new HPC

Environment Modules package

> Wrapper adaptation and migration on the new server

2015 : new HPC

2015 : Data visualization

As Galaxy visualization plugin (Highcharts) As embedded PHP/HTML

(4)

2016 : Roadmap, objectives GCC 2017

★ Improve visibility of our main workflows ○ Documentation / Examples ○ Facilitated access ○ Visualization ★ Automate tests with Planemo

★ Improve upload and access to big data (FTP) ★ Improve cleaning of datasets processes ★ Reporting / usage statistics

Highlights on our main workflows, relevant for our thematics:

> 8 preconfigured and validated workflows

2016 : Roadmap, objectives GCC 2017

Highlights on our main workflows, relevant for our thematics:

> 8 preconfigured and validated workflows

2016 : Roadmap, objectives GCC 2017

G. Sarah

F. Homa

Highlights on our main workflows, relevant for our thematics:

> 8 preconfigured and validated workflows

2016 : Roadmap, objectives GCC 2017

G. Andres

A. Dereeper

Highlights on our main workflows, relevant for our thematics:

> 8 preconfigured and validated workflows

2016 : Roadmap, objectives GCC 2017

Highlights on our main workflows, relevant for our thematics:

> 8 preconfigured and validated workflows

(5)

Documentation with Galaxy pages

Workflow / Example Datasets / History of analysis

2016 : Roadmap, objectives GCC 2017

2017 : Galaxy Community Conference

~150 participants

Trainings, Hackathons, Talks, Birds of a feather meetups, Posters, Software Demos

2017 : Galaxy Community Conference

400+

registered users

100+

original wrappers

30

shared workflows

~36,000

jobs / year

~53,000

CPU hour / year

What’s next ?

Connection to our existing information systems through Galaxy APIs or Tripal

> Genome Hubs, SniPlay, GreenPhyl...

What’s next ?

Continue adding new visualizations

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Acknowledgement

Alexis Dereeper Alix Armero Villanueva Anestis Gkanogiannis Aurore Comte Benjamin Penaud Bertrand Pitollat Cedric Goby Chantal Hamelin Christine Tranchant Coline Thomas Dominique This Etienne Loire Franc-Christophe Baurens Francois Sabot Frédéric Mahé Frédéric De Lamotte Gaetan Droc Gautier Sarah Guilhem Sempere Guillaume Martin Julie Reveillaud Mathieu Rouard Manuel Ruiz Sébastien RAVEL

Références

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