A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications.

In this paper we introduce the notion of interaction net- work of amino acids of a protein (SSE-IN) and study some of the properties of these networks. We give dif- ferent means

Outputs: (1) Indication of quality of the alignment based on different scores, (2) The structure based sequence alignment along with PBs and residue numbers, (3) The tree used

L’archive ouverte pluridisciplinaire HAL, est destinée au dépôt et à la diffusion de documents scientifiques de niveau recherche, publiés ou non, émanant des

This document discusses its latest advances in ontology matching evaluation: ( i ) by providing new measures for ontology matching evaluation, such as semantic precision and recall

The standard method of bi-directional best hit (BDBH) was used to predict orthologous genes between two gen- omes and proteic sequence alignments were obtained using the

We present the mechanisms of a remanent alignment of polarizable molecules dispersed in a solid silica gel matrix, when submitted to powerful, femtosecond, linearly polarized,

We derive a perspective projection matrix for 3D lines expressed in Pl¨ucker coordinates and a joint projection ma- trix mapping a 3D line to a set of image lines in the second set

The process of producing the database of homol- ogy-derived structures is effectively a partial merger of the database of known three-dimensional structures, here the