• Aucun résultat trouvé

Computational methods for de novo assembly of next-generation genome sequencing data

N/A
N/A
Protected

Academic year: 2021

Partager "Computational methods for de novo assembly of next-generation genome sequencing data"

Copied!
137
0
0

Texte intégral

Loading

Figure

Figure 1-1: Structure of the DNA.
Figure 1-2: Evolution of DNA sequencing technologies, 2007-2011, in terms of throughput and read length
Figure 2-1: Comparison of single (in red), paired U 1 (in blue) and paired U 2 unique- unique-ness (in green) of reads in the lambda-phage genome.
Table 2.1: Example of suffix array and LCP array for the word ’babar’.
+7

Références

Documents relatifs

Direct cortico- spinal projec- tions Areas of sig- nificant projec- tion in MI Cortical rela- tionships Unit response to peripheral field stimula- tion Major thalamic

(2011) A Practical Comparison of De Novo Genome Assembly Software Tools for Next- Generation Sequencing Technologies.. (2011) Parallelized short read

Local assembly [200] is more sensitive at the event (expressed SNP, alternative splicing forms) scale. A gene or a gene family corresponds to a bi-connected component in the graph,

Because our RNA-seq libraries potentially did not cover all putative transcripts in the genome, we performed as a second approach an ab initio gene prediction..

L’archive ouverte pluridisciplinaire HAL, est destinée au dépôt et à la diffusion de documents scientifiques de niveau recherche, publiés ou non, émanant des

Key metrics are CEGMA (number of 458 core eukaryotic genes present); COVERAGE and VALIDITY (of validated Fosmid regions, calculated using COMPASS); OPTICAL MAP 1 and OPTICAL MAP 1 –

seriation, spectral methods, combinatorial optimization, convex relaxations, permutations, per- mutahedron, robust optimization, de novo genome assembly, third generation

It therefore follows that at high loading rates the fracture toughness and macroscopic peak strength of a rock sample can be higher than the quasi-static peak stress. The