Application of Lempel-Ziv complexity to alignment-free sequence comparison of protein families

Central to the InterPro database are pre- dictive models, known as signatures, from a range of different protein family databases that have different biological focuses and

The assignment is based on support vector machine classification of binary feature vectors denoting the presence or absence in the protein of highly conserved

It can be used to comprehensively evalu- ate AF methods under five different sequence analysis scenarios: protein sequence classification, gene tree in- ference, regulatory

Abstract: We give a new analysis and proof of the Normal limiting distribu- tion of the number of phrases in the 1978 Lempel-Ziv compression algorithm on random sequences built from

The process of producing the database of homol- ogy-derived structures is effectively a partial merger of the database of known three-dimensional structures, here the

This motivated us to replace the notion of common contact by the more general notion of similar internal distance (according to a fixed threshold), and then to pro- pose

When co-variation analysis aims to gain evolutionary information, OMES and ELSC are well suited to identify the co-evolving residues that contributed to the divergence within

Maximum Entropy modelling of a few protein families with pairwise interaction Potts models give values of σ ranging between 1.2 (when all amino acids present in the multiple